Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G41190 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 21 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Nin one binding (NOB1) Zn-ribbon like (InterProIPR014881) D-site 20S pre-rRNA nuclease (InterProIPR017117) Has 855 Blast hits to 653 proteins in 196 species Archae - 53 Bacteria - 16 Metazoa - 335 Fungi - 168 Plants - 29 Viruses - 10 Other Eukaryotes - 244 (source NCBI BLink) )

140 Proteins interacs with AT5G41190
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G32470

Predicted

Affinity Capture-MS

FSW = 0.5562

Unknown

UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE
AT2G17360

Predicted

Affinity Capture-MS

FSW = 0.0443

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT2G31610

Predicted

Affinity Capture-MS

FSW = 0.0171

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3A)
AT5G15200

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0778

Unknown

40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT2G20450

Predicted

Affinity Capture-MS

FSW = 0.4416

Unknown

60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT3G08710

Predicted

Affinity Capture-MS

FSW = 0.1751

Unknown

ATH9 (THIOREDOXIN H-TYPE 9)
AT3G56190

Predicted

Affinity Capture-MS

FSW = 0.4120

Unknown

ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT3G62150

Predicted

Affinity Capture-MS

FSW = 0.1800

Unknown

PGP21 (P-GLYCOPROTEIN 21) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G22780

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.5919

Unknown

PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0684

Unknown

RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07930Predicted

Affinity Capture-MS

FSW = 0.5747

Unknown

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G34030Predicted

Affinity Capture-MS

FSW = 0.0509

Unknown

40S RIBOSOMAL PROTEIN S18 (RPS18B)
AT3G60770

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0297

Unknown

40S RIBOSOMAL PROTEIN S13 (RPS13A)
AT3G20390

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2170

Unknown

ENDORIBONUCLEASE L-PSP FAMILY PROTEIN
AT3G08950

Predicted

Affinity Capture-MS

FSW = 0.6020

Unknown

ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN
AT2G19860

Predicted

Affinity Capture-MS

FSW = 0.4698

Unknown

HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G19980

Predicted

Affinity Capture-MS

FSW = 0.4388

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G20290

Predicted

Affinity Capture-MS

FSW = 0.0519

Unknown

40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT1G18540

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0882

Unknown

60S RIBOSOMAL PROTEIN L6 (RPL6A)
AT1G15210

Predicted

Affinity Capture-MS

FSW = 0.5699

Unknown

PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G08530

Predicted

Affinity Capture-MS

FSW = 0.0762

Unknown

CLATHRIN HEAVY CHAIN PUTATIVE
AT3G22890

Predicted

Affinity Capture-MS

FSW = 0.0135

Unknown

APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT1G18080

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0309

Unknown

ATARCA NUCLEOTIDE BINDING
AT3G16950

Predicted

Affinity Capture-MS

FSW = 0.5447

Unknown

LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE
AT2G01350

Predicted

Affinity Capture-MS

FSW = 0.0716

Unknown

QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE) NICOTINATE-NUCLEOTIDE DIPHOSPHORYLASE (CARBOXYLATING)
AT5G13050

Predicted

Affinity Capture-MS

FSW = 0.5400

Unknown

5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE
AT3G44610

Predicted

Affinity Capture-MS

FSW = 0.2193

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G11630

Predicted

Affinity Capture-MS

FSW = 0.3671

Unknown

2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT3G06040

Predicted

Affinity Capture-MS

FSW = 0.5095

Unknown

RIBOSOMAL PROTEIN L12 FAMILY PROTEIN
AT3G58510

Predicted

Affinity Capture-MS

FSW = 0.0542

Unknown

DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT5G60390

Predicted

Affinity Capture-MS

FSW = 0.3865

Unknown

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT5G45420

Predicted

Affinity Capture-MS

FSW = 0.4975

Unknown

MYB FAMILY TRANSCRIPTION FACTOR
AT5G23740

Predicted

Affinity Capture-MS

FSW = 0.4474

Unknown

RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G62880

Predicted

Affinity Capture-MS

FSW = 0.0496

Unknown

ARAC10 GTP BINDING
AT1G27970

Predicted

Affinity Capture-MS

FSW = 0.4118

Unknown

NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT3G11964Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0183

Unknown

RNA BINDING
AT2G04390

Predicted

Affinity Capture-MS

FSW = 0.0307

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17A)
AT4G00100

Predicted

Affinity Capture-MS

FSW = 0.0605

Unknown

ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G61430

Predicted

Affinity Capture-MS

FSW = 0.1459

Unknown

PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL
AT4G28950

Predicted

Affinity Capture-MS

FSW = 0.1434

Unknown

ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING
AT3G13560

Predicted

Affinity Capture-MS

FSW = 0.1087

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT3G55810

Predicted

Affinity Capture-MS

FSW = 0.0522

Unknown

PYRUVATE KINASE PUTATIVE
AT1G75370

Predicted

Affinity Capture-MS

FSW = 0.0192

Unknown

SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHATIDYLINOSITOL TRANSFER-LIKE PROTEIN PUTATIVE
AT1G50310

Predicted

Affinity Capture-MS

FSW = 0.2338

Unknown

STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G43370

Predicted

Affinity Capture-MS

FSW = 0.5606

Unknown

APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G13320

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1607

Unknown

PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT4G24400

Predicted

Affinity Capture-MS

FSW = 0.3919

Unknown

CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT2G20580

Predicted

Affinity Capture-MS

FSW = 0.0465

Unknown

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT4G36860

Predicted

Affinity Capture-MS

FSW = 0.5469

Unknown

ZINC ION BINDING
AT1G53750

Predicted

Co-purification

Affinity Capture-Western

FSW = 0.0174

Unknown

RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT5G19990

Predicted

Affinity Capture-MS

FSW = 0.0405

Unknown

RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT3G53870

Predicted

Affinity Capture-MS

FSW = 0.0438

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT1G09640

Predicted

Affinity Capture-MS

FSW = 0.4049

Unknown

ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT2G42520

Predicted

Affinity Capture-MS

FSW = 0.0213

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT2G35690

Predicted

Affinity Capture-MS

FSW = 0.4259

Unknown

ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS
AT5G57015

Predicted

Affinity Capture-MS

FSW = 0.0524

Unknown

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G03930

Predicted

Affinity Capture-MS

FSW = 0.0602

Unknown

ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT4G25630

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0262

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT3G13445

Predicted

Affinity Capture-MS

FSW = 0.1555

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT5G59870

Predicted

Affinity Capture-MS

FSW = 0.5427

Unknown

HTA6 DNA BINDING
AT5G44500

Predicted

Affinity Capture-MS

FSW = 0.4295

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT3G18130

Predicted

Affinity Capture-MS

FSW = 0.0358

Unknown

RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT2G23460

Predicted

Affinity Capture-MS

FSW = 0.0816

Unknown

XLG1 (EXTRA-LARGE G-PROTEIN 1) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER
AT2G37470

Predicted

Affinity Capture-MS

FSW = 0.4141

Unknown

HISTONE H2B PUTATIVE
AT3G18600

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0056

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G34065

Predicted

Affinity Capture-MS

FSW = 0.1800

Unknown

SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING
AT2G18450

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1732

Unknown

SDH1-2 SUCCINATE DEHYDROGENASE
AT1G72480

Predicted

Affinity Capture-MS

FSW = 0.3650

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK)
AT2G13650

Predicted

Affinity Capture-MS

FSW = 0.4620

Unknown

GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT4G30990

Predicted

Affinity Capture-MS

FSW = 0.4525

Unknown

BINDING
AT1G13060

Predicted

Co-purification

FSW = 0.0178

Unknown

PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G52580

Predicted

Affinity Capture-MS

FSW = 0.5628

Unknown

40S RIBOSOMAL PROTEIN S14 (RPS14C)
AT5G41480

Predicted

Affinity Capture-MS

FSW = 0.5819

Unknown

GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT2G24040

Predicted

Affinity Capture-MS

FSW = 0.5765

Unknown

HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT3G12530

Predicted

Affinity Capture-MS

FSW = 0.5775

Unknown

PSF2
AT4G30800

Predicted

Affinity Capture-MS

FSW = 0.0553

Unknown

40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT2G05840

Predicted

Affinity Capture-RNA

FSW = 0.0268

Unknown

PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G29430

Predicted

Affinity Capture-MS

FSW = 0.1100

Unknown

RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G47880

Predicted

Affinity Capture-MS

FSW = 0.4717

Unknown

ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR
AT3G13230

Predicted

two hybrid

Affinity Capture-MS

two hybrid

Co-expression

FSW = 0.0477

Unknown

RNA BINDING
AT1G24706

Predicted

Affinity Capture-MS

FSW = 0.1679

Unknown

UNKNOWN PROTEIN
AT1G31660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1396

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G34580

Predicted

interologs mapping

FSW = 0.1405

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G42440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1291

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT1G51770

Predicted

Affinity Capture-MS

FSW = 0.5595

Unknown

UNKNOWN PROTEIN
AT1G55150

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0048

Unknown

DEAD BOX RNA HELICASE PUTATIVE (RH20)
AT1G62880

Predicted

Affinity Capture-MS

FSW = 0.5430

Unknown

CORNICHON FAMILY PROTEIN
AT1G71280

Predicted

Affinity Capture-MS

FSW = 0.4944

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G78970

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1325

Unknown

LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE
AT1G79210

Predicted

Affinity Capture-MS

FSW = 0.1330

Unknown

20S PROTEASOME ALPHA SUBUNIT B PUTATIVE
AT2G03667

Predicted

Affinity Capture-MS

FSW = 0.3771

Unknown

ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING)
AT2G29390

Predicted

Affinity Capture-MS

FSW = 0.4147

Unknown

SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT2G46860

Predicted

Affinity Capture-MS

FSW = 0.5005

Unknown

ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT2G47420

Predicted

Affinity Capture-MS

FSW = 0.0758

Unknown

DIMETHYLADENOSINE TRANSFERASE PUTATIVE
AT3G51270

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

co-fractionation

Co-fractionation

interaction prediction

Co-expression

FSW = 0.1877

Unknown

ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT3G62770

Predicted

Affinity Capture-MS

FSW = 0.3518

Unknown

ATATG18A
AT4G26230

Predicted

Affinity Capture-MS

FSW = 0.3017

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT4G39330

Predicted

Affinity Capture-MS

FSW = 0.5535

Unknown

CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT5G06420

Predicted

Affinity Capture-MS

FSW = 0.1188

Unknown

ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G19820

Predicted

Affinity Capture-MS

FSW = 0.3831

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT1G11530

Predicted

Affinity Capture-MS

FSW = 0.4413

Unknown

ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE
AT1G20696

Predicted

Affinity Capture-MS

FSW = 0.4148

Unknown

HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G20920

Predicted

Affinity Capture-MS

FSW = 0.3907

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT1G33110

Predicted

Affinity Capture-MS

FSW = 0.4814

Unknown

MATE EFFLUX FAMILY PROTEIN
AT1G54290

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0791

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT1G55730

Predicted

Affinity Capture-MS

FSW = 0.3710

Unknown

ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER
AT1G64480

Predicted

Affinity Capture-MS

FSW = 0.4903

Unknown

CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING
AT1G64520

Predicted

two hybrid

FSW = 0.0144

Unknown

RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE
AT1G76720

Predicted

Affinity Capture-MS

FSW = 0.5293

Unknown

GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT2G03040

Predicted

Affinity Capture-MS

FSW = 0.1204

Unknown

TRANSMEMBRANE PROTEIN-RELATED
AT2G21250

Predicted

Affinity Capture-MS

FSW = 0.3261

Unknown

MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE
AT2G31020

Predicted

Affinity Capture-MS

FSW = 0.0877

Unknown

ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT2G34180

Predicted

Affinity Capture-MS

FSW = 0.0131

Unknown

CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G37840

Predicted

biochemical

FSW = 0.0166

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT2G47760

Predicted

Affinity Capture-RNA

FSW = 0.0712

Unknown

ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC
AT3G05540

Predicted

Affinity Capture-MS

FSW = 0.2024

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK)
AT3G05960

Predicted

Affinity Capture-MS

FSW = 0.4078

Unknown

STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G12690

Predicted

Affinity Capture-MS

FSW = 0.5261

Unknown

AGC15 (AGC KINASE 15) KINASE
AT3G18660

Predicted

Affinity Capture-MS

FSW = 0.0676

Unknown

PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G19940

Predicted

Affinity Capture-MS

FSW = 0.4207

Unknown

SUGAR TRANSPORTER PUTATIVE
AT3G20650

Predicted

Affinity Capture-MS

FSW = 0.3486

Unknown

MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G23570

Predicted

Affinity Capture-MS

FSW = 0.5153

Unknown

DIENELACTONE HYDROLASE FAMILY PROTEIN
AT3G30842

Predicted

Affinity Capture-MS

FSW = 0.3954

Unknown

PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G48780

Predicted

Affinity Capture-MS

FSW = 0.0663

Unknown

SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE
AT3G52390

Predicted

Affinity Capture-MS

FSW = 0.6151

Unknown

TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT3G53510

Predicted

Affinity Capture-MS

FSW = 0.2748

Unknown

ABC TRANSPORTER FAMILY PROTEIN
AT3G53880

Predicted

Co-purification

FSW = 0.0771

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT3G57550

Predicted

Affinity Capture-MS

FSW = 0.1756

Unknown

AGK2 (GUANYLATE KINASE) GUANYLATE KINASE
AT4G04955

Predicted

Affinity Capture-MS

FSW = 0.0298

Unknown

ATALN (ARABIDOPSIS ALLANTOINASE) ALLANTOINASE/ HYDROLASE
AT4G14670

Predicted

Affinity Capture-MS

FSW = 0.0258

Unknown

CLPB2 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G17770

Predicted

Affinity Capture-MS

FSW = 0.5512

Unknown

ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT4G21800

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0477

Unknown

QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING
AT5G02560

Predicted

Affinity Capture-MS

FSW = 0.0798

Unknown

HTA12 DNA BINDING
AT5G09390

Predicted

Affinity Capture-MS

FSW = 0.3378

Unknown

CD2-BINDING PROTEIN-RELATED
AT5G09630

Predicted

Affinity Capture-MS

FSW = 0.4722

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT5G19660

Predicted

Affinity Capture-MS

FSW = 0.4637

Unknown

S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE
AT5G46150

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2299

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT5G54200

Predicted

Affinity Capture-MS

FSW = 0.2983

Unknown

WD-40 REPEAT FAMILY PROTEIN
AT5G65900

Predicted

Affinity Capture-MS

FSW = 0.0168

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT2G35940

Predicted

two hybrid

FSW = 0.0060

Unknown

BLH1 (BEL1-LIKE HOMEODOMAIN 1) DNA BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ TRANSCRIPTION FACTOR

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454