Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G41190 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 21 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Nin one binding (NOB1) Zn-ribbon like (InterProIPR014881) D-site 20S pre-rRNA nuclease (InterProIPR017117) Has 855 Blast hits to 653 proteins in 196 species Archae - 53 Bacteria - 16 Metazoa - 335 Fungi - 168 Plants - 29 Viruses - 10 Other Eukaryotes - 244 (source NCBI BLink) )
140 Proteins interacs with AT5G41190Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G32470![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5562
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT2G17360![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0443
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT2G31610![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0171
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3A) |
AT5G15200![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSCo-expression | FSW = 0.0778
| Unknown | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
AT2G20450![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4416
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT3G08710![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1751
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT3G56190![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4120
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT3G62150![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1800
| Unknown | PGP21 (P-GLYCOPROTEIN 21) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G22780![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5919
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07770![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0684
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.5747
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G34030 | PredictedAffinity Capture-MS | FSW = 0.0509
| Unknown | 40S RIBOSOMAL PROTEIN S18 (RPS18B) |
AT3G60770![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSCo-expression | FSW = 0.0297
| Unknown | 40S RIBOSOMAL PROTEIN S13 (RPS13A) |
AT3G20390![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2170
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT3G08950![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.6020
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT2G19860![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4698
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G19980![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4388
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G20290![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0519
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT1G18540![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0882
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT1G15210![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5699
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G08530![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0762
| Unknown | CLATHRIN HEAVY CHAIN PUTATIVE |
AT3G22890![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0135
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT1G18080![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0309
| Unknown | ATARCA NUCLEOTIDE BINDING |
AT3G16950![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5447
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT2G01350![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0716
| Unknown | QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE) NICOTINATE-NUCLEOTIDE DIPHOSPHORYLASE (CARBOXYLATING) |
AT5G13050![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5400
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT3G44610![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2193
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G11630![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3671
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT3G06040![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5095
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT3G58510![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0542
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
AT5G60390![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3865
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G45420![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4975
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT5G23740![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4474
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G62880![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0496
| Unknown | ARAC10 GTP BINDING |
AT1G27970![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4118
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT3G11964 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0183
| Unknown | RNA BINDING |
AT2G04390![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0307
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
AT4G00100![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0605
| Unknown | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G61430![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1459
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT4G28950![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1434
| Unknown | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT3G13560![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1087
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT3G55810![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0522
| Unknown | PYRUVATE KINASE PUTATIVE |
AT1G75370![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0192
| Unknown | SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHATIDYLINOSITOL TRANSFER-LIKE PROTEIN PUTATIVE |
AT1G50310![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2338
| Unknown | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G43370![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5606
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G13320![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1607
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT4G24400![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3919
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT2G20580![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0465
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT4G36860![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5469
| Unknown | ZINC ION BINDING |
AT1G53750![]() ![]() ![]() ![]() | PredictedCo-purificationAffinity Capture-Western | FSW = 0.0174
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT5G19990![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0405
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT3G53870![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0438
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT1G09640![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4049
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT2G42520![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0213
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT2G35690![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4259
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT5G57015![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0524
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G03930![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0602
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT4G25630![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSCo-expression | FSW = 0.0262
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT3G13445![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1555
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT5G59870![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5427
| Unknown | HTA6 DNA BINDING |
AT5G44500![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4295
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT3G18130![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0358
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT2G23460![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0816
| Unknown | XLG1 (EXTRA-LARGE G-PROTEIN 1) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
AT2G37470![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4141
| Unknown | HISTONE H2B PUTATIVE |
AT3G18600![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSCo-expression | FSW = 0.0056
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G34065![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1800
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
AT2G18450![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1732
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT1G72480![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3650
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT2G13650![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4620
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT4G30990![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4525
| Unknown | BINDING |
AT1G13060![]() ![]() ![]() ![]() | PredictedCo-purification | FSW = 0.0178
| Unknown | PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G52580![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5628
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT5G41480![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5819
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT2G24040![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5765
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT3G12530![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5775
| Unknown | PSF2 |
AT4G30800![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0553
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT2G05840![]() ![]() ![]() ![]() | PredictedAffinity Capture-RNA | FSW = 0.0268
| Unknown | PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G29430![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1100
| Unknown | RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G47880![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4717
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
AT3G13230![]() ![]() ![]() ![]() | Predictedtwo hybridAffinity Capture-MStwo hybridCo-expression | FSW = 0.0477
| Unknown | RNA BINDING |
AT1G24706![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1679
| Unknown | UNKNOWN PROTEIN |
AT1G31660![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1396
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
AT1G34580![]() ![]() ![]() ![]() | Predictedinterologs mapping | FSW = 0.1405
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G42440![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1291
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
AT1G51770![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5595
| Unknown | UNKNOWN PROTEIN |
AT1G55150![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSCo-expression | FSW = 0.0048
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH20) |
AT1G62880![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5430
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G71280![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4944
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G78970![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1325
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT1G79210![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1330
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT2G03667![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3771
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT2G29390![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4147
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT2G46860![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5005
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT2G47420![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0758
| Unknown | DIMETHYLADENOSINE TRANSFERASE PUTATIVE |
AT3G51270![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationinteraction predictionCo-expression | FSW = 0.1877
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE |
AT3G62770![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3518
| Unknown | ATATG18A |
AT4G26230![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3017
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT4G39330![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5535
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G06420![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1188
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G19820![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3831
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT1G11530![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4413
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G20696![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4148
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G20920![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3907
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G33110![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4814
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G54290![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0791
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G55730![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3710
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G64480![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4903
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G64520![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0144
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT1G76720![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5293
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT2G03040![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1204
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G21250![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3261
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G31020![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0877
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G34180![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0131
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G37840![]() ![]() ![]() ![]() | Predictedbiochemical | FSW = 0.0166
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G47760![]() ![]() ![]() ![]() | PredictedAffinity Capture-RNA | FSW = 0.0712
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
AT3G05540![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2024
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK) |
AT3G05960![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4078
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G12690![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5261
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G18660![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0676
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G19940![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4207
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G20650![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3486
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G23570![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5153
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G30842![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3954
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G48780![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0663
| Unknown | SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE |
AT3G52390![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.6151
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G53510![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2748
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT3G53880![]() ![]() ![]() ![]() | PredictedCo-purification | FSW = 0.0771
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G57550![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.1756
| Unknown | AGK2 (GUANYLATE KINASE) GUANYLATE KINASE |
AT4G04955![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | ATALN (ARABIDOPSIS ALLANTOINASE) ALLANTOINASE/ HYDROLASE |
AT4G14670![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0258
| Unknown | CLPB2 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G17770![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.5512
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G21800![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0477
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT5G02560![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0798
| Unknown | HTA12 DNA BINDING |
AT5G09390![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.3378
| Unknown | CD2-BINDING PROTEIN-RELATED |
AT5G09630![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4722
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G19660![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.4637
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G46150![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2299
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G54200![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.2983
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G65900![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0168
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G35940![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0060
| Unknown | BLH1 (BEL1-LIKE HOMEODOMAIN 1) DNA BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ TRANSCRIPTION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454