Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G01350 - ( QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE) nicotinate-nucleotide diphosphorylase (carboxylating) )
26 Proteins interacs with AT2G01350Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.0777
| Class C:plastid | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT3G61080 | Predictedpull down | FSW = 0.0282
| Class C:plastid | FRUCTOSAMINE KINASE FAMILY PROTEIN |
AT5G53480 | Predictedtwo hybridinteraction prediction | FSW = 0.0219
| Class C:plastid | IMPORTIN BETA-2 PUTATIVE |
AT3G62150 | PredictedAffinity Capture-MS | FSW = 0.1407
| Unknown | PGP21 (P-GLYCOPROTEIN 21) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.0947
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT4G37910 | Predictedpull down | FSW = 0.0043
| Unknown | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT3G62870 | PredictedSynthetic Lethality | FSW = 0.0098
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G45780 | PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT1G54080 | Predictedinteraction prediction | FSW = 0.0162
| Unknown | OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE |
AT1G70580 | PredictedAffinity Capture-MS | FSW = 0.0632
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT3G06720 | Predictedtwo hybridinteraction prediction | FSW = 0.0237
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT1G72560 | PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT1G34065 | PredictedAffinity Capture-MS | FSW = 0.1130
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.0948
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT4G29430 | PredictedAffinity Capture-MS | FSW = 0.0573
| Unknown | RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.0772
| Unknown | PSF2 |
AT5G50110 | Predictedpull down | FSW = 0.0298
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN CELL CYCLE LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUCOSE INHIBITED DIVISION PROTEIN (INTERPROIPR003682) HAS 3963 BLAST HITS TO 3963 PROTEINS IN 1297 SPECIES ARCHAE - 0 BACTERIA - 2754 METAZOA - 2 FUNGI - 0 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 1189 (SOURCE NCBI BLINK) |
AT1G26320 | PredictedSynthetic Lethality | FSW = 0.0300
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0291
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT3G02000 | PredictedAffinity Capture-MS | FSW = 0.0600
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
AT4G16440 | PredictedAffinity Capture-MS | FSW = 0.0938
| Unknown | FERREDOXIN HYDROGENASE |
AT5G15240 | PredictedAffinity Capture-MS | FSW = 0.0300
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.0716
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT2G23420 | PredictedSynthetic LethalitySynthetic LethalityGene neighbors methodCo-expression | FSW = 0.0200
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
AT1G28760 | Predictedtwo hybrid | FSW = 0.1379
| Unknown | UNKNOWN PROTEIN |
AT1G02690 | Predictedtwo hybrid | FSW = 0.0256
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454