Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G62150 - ( PGP21 (P-GLYCOPROTEIN 21) ATPase coupled to transmembrane movement of substances )
43 Proteins interacs with AT3G62150| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G32470
   | PredictedAffinity Capture-MS | FSW = 0.1976
| Class C:vacuole | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
| AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.2536
| Class C:vacuole | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT1G15210
| PredictedAffinity Capture-MS | FSW = 0.2046
| Class C:plasma membrane | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT5G23740
| PredictedAffinity Capture-MS | FSW = 0.2427
| Class C:plasma membrane | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G28415
| PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.6098
| Class C:plasma membrane | P-GLYCOPROTEIN PUTATIVE |
| AT3G28380
| PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5814
| Class C:plasma membrane | PGP17 (P-GLYCOPROTEIN 17) ATP BINDING / ATPASE/ ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT3G28860
| PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5435
| Class C:plasma membrane | ABCB19 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / AUXIN EFFLUX TRANSMEMBRANE TRANSPORTER |
| AT3G28345
| PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5814
| Class C:plasma membrane | ABC TRANSPORTER FAMILY PROTEIN |
| AT2G36910
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.5682
| Class C:plasma membrane | ABCB1 (ATP BINDING CASSETTE SUBFAMILY B1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / AUXIN EFFLUX TRANSMEMBRANE TRANSPORTER/ CALMODULIN BINDING |
| AT1G02520
| PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.5814
| Class C:plasma membrane | PGP11 (P-GLYCOPROTEIN 11) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT2G47000
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.4545
| Class C:plasma membrane | ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / XENOBIOTIC-TRANSPORTING ATPASE |
| AT3G55320
| PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.6098
| Class C:plasma membrane | PGP20 (P-GLYCOPROTEIN 20) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT3G08950
| PredictedAffinity Capture-MS | FSW = 0.2336
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
| AT2G19860
| PredictedAffinity Capture-MS | FSW = 0.1572
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
| AT3G19980
| PredictedAffinity Capture-MS | FSW = 0.1325
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT3G20550
| PredictedPhenotypic Suppression | FSW = 0.0096
| Unknown | DDL (DAWDLE) |
| AT2G01350
| PredictedAffinity Capture-MS | FSW = 0.1407
| Unknown | QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE) NICOTINATE-NUCLEOTIDE DIPHOSPHORYLASE (CARBOXYLATING) |
| AT3G11630
| PredictedAffinity Capture-MS | FSW = 0.1163
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT1G10680
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.5952
| Unknown | PGP10 (P-GLYCOPROTEIN 10) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT1G34065
| PredictedAffinity Capture-MS | FSW = 0.1153
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
| AT4G14150
| PredictedGene fusion method | FSW = 0.0497
| Unknown | PAKRP1 (PHRAGMOPLAST-ASSOCIATED KINESIN-RELATED PROTEIN 1) MICROTUBULE MOTOR/ PLUS-END-DIRECTED MICROTUBULE MOTOR |
| AT5G41480
| PredictedAffinity Capture-MS | FSW = 0.2328
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
| AT3G12530
| PredictedAffinity Capture-MS | FSW = 0.1797
| Unknown | PSF2 |
| AT1G51770
| PredictedAffinity Capture-MS | FSW = 0.1894
| Unknown | UNKNOWN PROTEIN |
| AT2G29390
| PredictedAffinity Capture-MS | FSW = 0.2034
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
| AT3G04710
| Predictedinterologs mapping | FSW = 0.0047
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
| AT3G12690
| PredictedAffinity Capture-MS | FSW = 0.1866
| Unknown | AGC15 (AGC KINASE 15) KINASE |
| AT3G23570
| PredictedAffinity Capture-MS | FSW = 0.1819
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
| AT3G52390
| PredictedAffinity Capture-MS | FSW = 0.1967
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
| AT3G53880
| PredictedCo-purification | FSW = 0.0571
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT4G26230
| PredictedAffinity Capture-MS | FSW = 0.1282
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
| AT4G39330
| PredictedAffinity Capture-MS | FSW = 0.1581
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
| AT5G41190
| PredictedAffinity Capture-MS | FSW = 0.1800
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
| AT3G28360
| PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5556
| Unknown | PGP16 (P-GLYCOPROTEIN 16) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT3G28390
| PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6098
| Unknown | PGP18 (P-GLYCOPROTEIN 18) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT1G28010
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.6098
| Unknown | PGP14 (P-GLYCOPROTEIN 14) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT4G25960
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.4717
| Unknown | PGP2 (P-GLYCOPROTEIN 2) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT1G27940
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.6098
| Unknown | PGP13 (P-GLYCOPROTEIN 13) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT5G46540
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.6168
| Unknown | PGP7 (P-GLYCOPROTEIN 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT4G18050
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.6250
| Unknown | PGP9 (P-GLYCOPROTEIN 9) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT4G01820
| PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.5952
| Unknown | PGP3 (P-GLYCOPROTEIN 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT1G02530
| PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.6250
| Unknown | PGP12 (P-GLYCOPROTEIN 12) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT4G01830
| PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.6098
| Unknown | PGP5 (P-GLYCOPROTEIN 5) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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