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AT5G44500 - ( small nuclear ribonucleoprotein associated protein B putative / snRNP-B putative / Sm protein B putative )

125 Proteins interacs with AT5G44500

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G07930	Predicted Affinity Capture-MS	FSW = 0.5079	Class C: nucleus	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G09770	Predicted Affinity Capture-MS	FSW = 0.0064	Class C: nucleus	ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR
AT3G16950	Predicted Affinity Capture-MS	FSW = 0.4914	Class C: nucleus	LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE
AT5G60390	Predicted Affinity Capture-MS	FSW = 0.4081	Class C: nucleus	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT5G45420	Predicted Affinity Capture-MS	FSW = 0.4536	Class C: nucleus	MYB FAMILY TRANSCRIPTION FACTOR
AT5G23740	Predicted Affinity Capture-MS	FSW = 0.4730	Class C: nucleus	RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G27970	Predicted Affinity Capture-MS	FSW = 0.5662	Class C: nucleus	NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT1G76300	Predicted in vitro	FSW = 0.0155	Class C: nucleus	SMD3 (SNRNP CORE PROTEIN SMD3)
AT3G50670	Predicted Co-purification	FSW = 0.0139	Class C: nucleus	U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G13445	Predicted Affinity Capture-MS	FSW = 0.1372	Class C: nucleus	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT2G13570	Predicted Affinity Capture-MS	FSW = 0.0606	Class C: nucleus	NF-YB7 (NUCLEAR FACTOR Y SUBUNIT B7) TRANSCRIPTION FACTOR
AT2G37470	Predicted Affinity Capture-MS	FSW = 0.4459	Class C: nucleus	HISTONE H2B PUTATIVE
AT5G52470	Predicted in vitro	FSW = 0.0066	Class C: nucleus	FIB1 (FIBRILLARIN 1) SNORNA BINDING
AT2G42270	Predicted Affinity Capture-MS	FSW = 0.0199	Class C: nucleus	U5 SMALL NUCLEAR RIBONUCLEOPROTEIN HELICASE PUTATIVE
AT5G25230	Predicted Affinity Capture-MS	FSW = 0.0587	Class C: nucleus	ELONGATION FACTOR TU FAMILY PROTEIN
AT3G01280	Predicted Affinity Capture-MS	FSW = 0.0560	Unknown	VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL
AT4G32470	Predicted Affinity Capture-MS	FSW = 0.5250	Unknown	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE
AT2G20450	Predicted Affinity Capture-MS	FSW = 0.4374	Unknown	60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT1G22780	Predicted Affinity Capture-MS	FSW = 0.4913	Unknown	PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G56190	Predicted Affinity Capture-MS	FSW = 0.3452	Unknown	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT3G08710	Predicted Affinity Capture-MS	FSW = 0.1580	Unknown	ATH9 (THIOREDOXIN H-TYPE 9)
AT3G23990	Predicted two hybrid	FSW = 0.0019	Unknown	HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING
AT3G62870	Predicted synthetic growth defect	FSW = 0.0355	Unknown	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G08950	Predicted Affinity Capture-MS	FSW = 0.4932	Unknown	ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN
AT2G19860	Predicted Affinity Capture-MS	FSW = 0.5320	Unknown	HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G19980	Predicted Affinity Capture-MS	FSW = 0.4719	Unknown	ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G15210	Predicted Affinity Capture-MS	FSW = 0.5385	Unknown	PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT5G09660	Predicted two hybrid	FSW = 0.0065	Unknown	PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT2G31170	Predicted Affinity Capture-MS	FSW = 0.2342	Unknown	SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT4G26970	Predicted Affinity Capture-MS	FSW = 0.2294	Unknown	ACONITATE HYDRATASE/ COPPER ION BINDING
AT3G44610	Predicted Affinity Capture-MS	FSW = 0.2166	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT3G11630	Predicted Affinity Capture-MS	FSW = 0.2869	Unknown	2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT3G06040	Predicted Affinity Capture-MS	FSW = 0.4732	Unknown	RIBOSOMAL PROTEIN L12 FAMILY PROTEIN
AT4G36860	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.5378	Unknown	ZINC ION BINDING
AT5G62300	Predicted Affinity Capture-MS	FSW = 0.4569	Unknown	40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT4G24400	Predicted Affinity Capture-MS	FSW = 0.3766	Unknown	CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT1G79920	Predicted two hybrid	FSW = 0.0038	Unknown	ATP BINDING
AT5G43370	Predicted Affinity Capture-MS	FSW = 0.5155	Unknown	APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT4G22120	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2446	Unknown	EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT1G09640	Predicted Affinity Capture-MS	FSW = 0.4480	Unknown	ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT2G35690	Predicted Affinity Capture-MS	FSW = 0.4730	Unknown	ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS
AT3G10920	Predicted Affinity Capture-MS	FSW = 0.1855	Unknown	MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE
AT4G30990	Predicted Affinity Capture-MS	FSW = 0.4379	Unknown	BINDING
AT1G72480	Predicted Affinity Capture-MS	FSW = 0.4321	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK)
AT2G13650	Predicted Affinity Capture-MS	FSW = 0.4682	Unknown	GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT4G33720	Predicted Affinity Capture-MS	FSW = 0.0273	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT3G08730	Predicted Affinity Capture-MS	FSW = 0.1554	Unknown	PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G12530	Predicted Affinity Capture-MS	FSW = 0.4260	Unknown	PSF2
AT5G41480	Predicted Affinity Capture-MS	FSW = 0.5133	Unknown	GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT3G52580	Predicted Affinity Capture-MS	FSW = 0.5133	Unknown	40S RIBOSOMAL PROTEIN S14 (RPS14C)
AT3G25980	Predicted two hybrid	FSW = 0.0051	Unknown	MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT5G38470	Predicted two hybrid	FSW = 0.0079	Unknown	DNA REPAIR PROTEIN RAD23 PUTATIVE
AT3G22880	Predicted Affinity Capture-MS	FSW = 0.1191	Unknown	DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G24040	Predicted Affinity Capture-MS	FSW = 0.5760	Unknown	HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT1G71300	Predicted two hybrid	FSW = 0.0083	Unknown	VPS52/SAC2 FAMILY PROTEIN
AT4G19190	Predicted two hybrid	FSW = 0.0037	Unknown	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT4G31480	Predicted two hybrid	FSW = 0.0043	Unknown	COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE
AT1G03910	Predicted two hybrid	FSW = 0.0090	Unknown	EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CACTIN CENTRAL REGION (INTERPROIPR018816) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G368152) HAS 11516 BLAST HITS TO 6722 PROTEINS IN 356 SPECIES ARCHAE - 23 BACTERIA - 259 METAZOA - 6122 FUNGI - 1009 PLANTS - 493 VIRUSES - 33 OTHER EUKARYOTES - 3577 (SOURCE NCBI BLINK)
AT1G16590	Predicted two hybrid	FSW = 0.0054	Unknown	REV7 DNA BINDING
AT2G20635	Predicted two hybrid	FSW = 0.0080	Unknown	ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G26600	Predicted two hybrid	FSW = 0.0104	Unknown	CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING
AT5G47080	Predicted two hybrid	FSW = 0.0098	Unknown	CKB1 PROTEIN KINASE REGULATOR
AT5G59040	Predicted two hybrid	FSW = 0.0234	Unknown	COPT3 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER
AT5G60570	Predicted two hybrid	FSW = 0.0069	Unknown	KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN
AT4G24270	Predicted Affinity Capture-MS	FSW = 0.0125	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G38780	Predicted Affinity Capture-MS	FSW = 0.0587	Unknown	SPLICING FACTOR PUTATIVE
AT5G43910	Predicted Affinity Capture-MS	FSW = 0.0279	Unknown	PFKB-TYPE CARBOHYDRATE KINASE FAMILY PROTEIN
AT2G32000	Predicted two hybrid	FSW = 0.0208	Unknown	DNA TOPOISOMERASE FAMILY PROTEIN
AT5G58003	Predicted in vivo	FSW = 0.0073	Unknown	CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE
AT5G62290	Predicted Affinity Capture-Western	FSW = 0.0171	Unknown	NUCLEOTIDE-SENSITIVE CHLORIDE CONDUCTANCE REGULATOR (ICLN) FAMILY PROTEIN
AT1G24706	Predicted Affinity Capture-MS	FSW = 0.3473	Unknown	UNKNOWN PROTEIN
AT1G51770	Predicted Affinity Capture-MS	FSW = 0.5916	Unknown	UNKNOWN PROTEIN
AT1G62880	Predicted Affinity Capture-MS	FSW = 0.5743	Unknown	CORNICHON FAMILY PROTEIN
AT1G71280	Predicted Affinity Capture-MS	FSW = 0.5027	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT2G17620	Predicted Affinity Capture-MS	FSW = 0.2884	Unknown	CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G19910	Predicted Affinity Capture-MS	FSW = 0.3728	Unknown	RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN
AT2G29390	Predicted Affinity Capture-MS	FSW = 0.3594	Unknown	SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT2G43360	Predicted Affinity Capture-MS	FSW = 0.2688	Unknown	BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE
AT2G46650	Predicted two hybrid	FSW = 0.0073	Unknown	CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING
AT2G46860	Predicted Affinity Capture-MS	FSW = 0.5662	Unknown	ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT3G18860	Predicted two hybrid	FSW = 0.0036	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G53730	Predicted Affinity Capture-MS	FSW = 0.2078	Unknown	HISTONE H4
AT3G62770	Predicted Affinity Capture-MS	FSW = 0.3808	Unknown	ATATG18A
AT4G26230	Predicted Affinity Capture-MS	FSW = 0.3281	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT4G26810	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2332	Unknown	SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT4G39330	Predicted Affinity Capture-MS	FSW = 0.4633	Unknown	CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT5G05070	Predicted two hybrid	FSW = 0.0038	Unknown	ZINC ION BINDING
AT5G17000	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1543	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G19820	Predicted Affinity Capture-MS	FSW = 0.4330	Unknown	EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G24670	Predicted Affinity Capture-MS	FSW = 0.0462	Unknown	CATALYTIC/ HYDROLASE/ ZINC ION BINDING
AT1G05650	Predicted Affinity Capture-MS	FSW = 0.2956	Unknown	POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE
AT1G20696	Predicted Affinity Capture-MS	FSW = 0.4281	Unknown	HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G20920	Predicted Affinity Capture-MS	FSW = 0.3446	Unknown	DEAD BOX RNA HELICASE PUTATIVE
AT1G53900	Predicted Affinity Capture-MS	FSW = 0.1120	Unknown	GTP BINDING / TRANSLATION INITIATION FACTOR
AT1G55730	Predicted Affinity Capture-MS	FSW = 0.3796	Unknown	ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER
AT1G58520	Predicted Affinity Capture-MS	FSW = 0.1924	Unknown	HYDROLASE ACTING ON ESTER BONDS / LIPASE
AT1G64480	Predicted Affinity Capture-MS	FSW = 0.5917	Unknown	CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING
AT1G76720	Predicted Affinity Capture-MS	FSW = 0.4950	Unknown	GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT2G16740	Predicted Affinity Capture-MS	FSW = 0.2119	Unknown	UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT2G21250	Predicted Affinity Capture-MS	FSW = 0.3642	Unknown	MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE
AT2G31020	Predicted Affinity Capture-MS	FSW = 0.0845	Unknown	ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT2G37540	Predicted Affinity Capture-MS	FSW = 0.0439	Unknown	SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT2G41530	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3221	Unknown	SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS
AT3G05960	Predicted Affinity Capture-MS	FSW = 0.3849	Unknown	STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G12200	Predicted Affinity Capture-MS	FSW = 0.0409	Unknown	ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G12690	Predicted Affinity Capture-MS	FSW = 0.5458	Unknown	AGC15 (AGC KINASE 15) KINASE
AT3G19940	Predicted Affinity Capture-MS	FSW = 0.4541	Unknown	SUGAR TRANSPORTER PUTATIVE
AT3G20650	Predicted Affinity Capture-MS	FSW = 0.4534	Unknown	MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G23570	Predicted Affinity Capture-MS	FSW = 0.4330	Unknown	DIENELACTONE HYDROLASE FAMILY PROTEIN
AT3G30842	Predicted Affinity Capture-MS	FSW = 0.4872	Unknown	PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G51880	Predicted Affinity Capture-MS	FSW = 0.1289	Unknown	HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT3G52390	Predicted Affinity Capture-MS	FSW = 0.4862	Unknown	TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT3G53510	Predicted Affinity Capture-MS	FSW = 0.3309	Unknown	ABC TRANSPORTER FAMILY PROTEIN
AT4G17770	Predicted Affinity Capture-MS	FSW = 0.5261	Unknown	ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT4G35620	Predicted Affinity Capture-MS	FSW = 0.2125	Unknown	CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G09390	Predicted Affinity Capture-MS	FSW = 0.3678	Unknown	CD2-BINDING PROTEIN-RELATED
AT5G09630	Predicted Affinity Capture-MS	FSW = 0.4535	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT5G15070	Predicted Affinity Capture-MS	FSW = 0.0384	Unknown	ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT5G19150	Predicted Affinity Capture-MS	FSW = 0.2107	Unknown	CARBOHYDRATE KINASE FAMILY
AT5G19660	Predicted Affinity Capture-MS	FSW = 0.4665	Unknown	S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE
AT5G20060	Predicted Affinity Capture-MS	FSW = 0.1566	Unknown	PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN
AT5G41190	Predicted Affinity Capture-MS	FSW = 0.4295	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G46150	Predicted Affinity Capture-MS	FSW = 0.2317	Unknown	LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT5G54200	Predicted Affinity Capture-MS	FSW = 0.3142	Unknown	WD-40 REPEAT FAMILY PROTEIN
AT4G03430	Predicted Affinity Capture-MS	FSW = 0.0134	Unknown	EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT5G44500 - ( small nuclear ribonucleoprotein associated protein B putative / snRNP-B putative / Sm protein B putative )

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