Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G31170 - ( SYCO ARATH ATP binding / aminoacyl-tRNA ligase/ cysteine-tRNA ligase/ nucleotide binding )
83 Proteins interacs with AT2G31170Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G14660 | Predictedpull down | FSW = 0.0117
| Class C:plastidmitochondrion | PDF1B (PEPTIDE DEFORMYLASE 1B) IRON ION BINDING / PEPTIDE DEFORMYLASE |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2460
| Class C:plastidmitochondrion | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT3G49910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2048
| Class C:plastid | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT2G36160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3823
| Class C:plastid | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT3G20390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4608
| Class C:plastid | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT1G18540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3919
| Class C:plastid | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT5G24400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4509
| Class C:plastid | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT1G21640 | PredictedAffinity Capture-MS | FSW = 0.4000
| Class C:plastid | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT3G13580 | PredictedAffinity Capture-MS | FSW = 0.0064
| Class C:plastid | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT1G80030 | PredictedAffinity Capture-MS | FSW = 0.1106
| Class C:plastid | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.2119
| Class C:mitochondrion | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT3G12580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2647
| Class C:mitochondrion | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT3G61430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.3849
| Class C:mitochondrion | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4000
| Class C:mitochondrion | SDH1-2 SUCCINATE DEHYDROGENASE |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.1595
| Class C:mitochondrion | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT3G26590 | Predictedbiochemical | FSW = 0.0131
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT5G20010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3961
| Unknown | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.2449
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT3G09740 | PredictedAffinity Capture-MS | FSW = 0.2488
| Unknown | SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER |
AT1G11680 | PredictedSynthetic Lethality | FSW = 0.0023
| Unknown | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT1G63290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4267
| Unknown | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
AT1G55690 | PredictedAffinity Capture-MS | FSW = 0.1506
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G22120 | PredictedAffinity Capture-MS | FSW = 0.2756
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G24400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3091
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT1G20760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MS | FSW = 0.4538
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT1G09640 | Predictedin vitrotwo hybridAffinity Capture-MS | FSW = 0.1821
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT4G35310 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4596
| Unknown | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.1751
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT3G13940 | PredictedSynthetic Lethality | FSW = 0.0027
| Unknown | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.2342
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT2G23460 | PredictedAffinity Capture-MS | FSW = 0.2327
| Unknown | XLG1 (EXTRA-LARGE G-PROTEIN 1) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
AT2G37470 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2034
| Unknown | HISTONE H2B PUTATIVE |
AT5G57625 | PredictedAffinity Capture-MS | FSW = 0.1765
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MS | FSW = 0.0923
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.3111
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT3G52580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2238
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT5G63860 | PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT3G12530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3477
| Unknown | PSF2 |
AT1G05910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0458
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.2044
| Unknown | UNKNOWN PROTEIN |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0636
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.1920
| Unknown | UNKNOWN PROTEIN |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.2979
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.1522
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.2326
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.1686
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G03040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4853
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G16740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3757
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.4147
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT1G54290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2882
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.1908
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G16090 | PredictedAffinity Capture-MS | FSW = 0.4596
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT2G33840 | PredictedAffinity Capture-MS | FSW = 0.0122
| Unknown | TRNA SYNTHETASE CLASS I (W AND Y) FAMILY PROTEIN |
AT2G37540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3967
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G41530 | Predictedco-fractionationCo-fractionation | FSW = 0.2104
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G47570 | PredictedAffinity Capture-MS | FSW = 0.1729
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G06470 | Predictedbiochemical | FSW = 0.0326
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G23570 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3388
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G47120 | PredictedAffinity Capture-MS | FSW = 0.0074
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G11330 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1911
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT4G14240 | Predictedbiochemical | FSW = 0.0132
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT4G36800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4540
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
AT4G39330 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3672
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G06420 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4520
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G16750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2658
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G19150 | PredictedAffinity Capture-MS | FSW = 0.1763
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G37850 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4096
| Unknown | SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4228
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G54200 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4686
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2492
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.2156
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.2256
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.1001
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.2015
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G49470 | PredictedAffinity Capture-MS | FSW = 0.0093
| Unknown | NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2) |
AT4G04740 | PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | CPK23 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G35620 | PredictedAffinity Capture-MS | FSW = 0.1514
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G09630 | PredictedAffinity Capture-MS | FSW = 0.1631
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G17000 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3584
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G33040 | PredictedAffinity Capture-MS | FSW = 0.0080
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
AT1G28350 | PredictedAffinity Capture-MS | FSW = 0.0207
| Unknown | ATP BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / TYROSINE-TRNA LIGASE |
AT3G56300 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0690
| Unknown | TRNA SYNTHETASE CLASS I (C) FAMILY PROTEIN |
AT5G38830 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0909
| Unknown | TRNA SYNTHETASE CLASS I (C) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454