Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G63860 - ( UVR8 (UVB-RESISTANCE 8) chromatin binding / guanyl-nucleotide exchange factor )
46 Proteins interacs with AT5G63860Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G14960 | Predictedinterologs mapping | FSW = 0.0356
| Unknown | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G04820 | Predictedinterologs mapping | FSW = 0.0250
| Unknown | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G35620 | PredictedGene fusion method | FSW = 0.0385
| Unknown | ATPDIL5-2 (PDI-LIKE 5-2) PROTEIN DISULFIDE ISOMERASE |
AT2G24420 | PredictedGene fusion method | FSW = 0.0385
| Unknown | DNA REPAIR ATPASE-RELATED |
AT2G30710 | PredictedGene fusion method | FSW = 0.0047
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT5G17010 | PredictedGene fusion method | FSW = 0.0399
| Unknown | SUGAR TRANSPORTER FAMILY PROTEIN |
AT2G30620 | PredictedAffinity Capture-MS | FSW = 0.0600
| Unknown | HISTONE H12 |
AT3G63130 | Predictedinterologs mapping | FSW = 0.1012
| Unknown | RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1) RAN GTPASE ACTIVATOR/ PROTEIN BINDING |
AT5G59690 | PredictedAffinity Capture-MS | FSW = 0.1044
| Unknown | HISTONE H4 |
AT5G67630 | PredictedAffinity Capture-MS | FSW = 0.0665
| Unknown | DNA HELICASE PUTATIVE |
AT5G22330 | PredictedAffinity Capture-MS | FSW = 0.0646
| Unknown | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
AT2G31170 | PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G58510 | PredictedSynthetic Rescueinteraction prediction | FSW = 0.0174
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
AT5G20010 | PredictedAffinity Capture-MSinterologs mappingEnriched domain pair | FSW = 0.0534
| Unknown | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT3G48750 | Predictedbiochemicalinteraction prediction | FSW = 0.0055
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G17880 | PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN / BTF3B-LIKE TRANSCRIPTION FACTOR PUTATIVE |
AT1G73230 | PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN |
AT3G12110 | PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G51760 | PredictedGene fusion method | FSW = 0.0203
| Unknown | IAR3 (IAA-ALANINE RESISTANT 3) IAA-ALA CONJUGATE HYDROLASE/ METALLOPEPTIDASE |
AT2G32920 | PredictedGene fusion method | FSW = 0.2150
| Unknown | ATPDIL2-3 (PDI-LIKE 2-3) PROTEIN DISULFIDE ISOMERASE |
AT2G42520 | PredictedSynthetic Rescue | FSW = 0.0167
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT4G10710 | PredictedAffinity Capture-MS | FSW = 0.1005
| Unknown | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT2G47620 | PredictedAffinity Capture-MS | FSW = 0.0773
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.0603
| Unknown | HISTONE H2B PUTATIVE |
AT5G08630 | PredictedAffinity Capture-MS | FSW = 0.0955
| Unknown | DDT DOMAIN-CONTAINING PROTEIN |
AT5G18620 | PredictedAffinity Capture-MS | FSW = 0.0776
| Unknown | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
AT5G59470 | PredictedAffinity Capture-MS | FSW = 0.0327
| Unknown | PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEIN |
AT1G07140 | Predictedtwo hybridSynthetic Rescueinteraction prediction | FSW = 0.1578
| Unknown | SIRANBP RAN GTPASE BINDING |
AT1G08880 | PredictedAffinity Capture-MS | FSW = 0.0638
| Unknown | H2AXA DNA BINDING |
AT1G52740 | PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0713
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT3G03110 | Predictedinteraction predictiontwo hybridSynthetic Lethality | FSW = 0.0689
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT3G46320 | PredictedAffinity Capture-MS | FSW = 0.1174
| Unknown | HISTONE H4 |
AT4G27640 | PredictedAffinity Capture-MS | FSW = 0.0845
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT5G10390 | PredictedAffinity Capture-MS | FSW = 0.0714
| Unknown | HISTONE H3 |
AT5G10400 | PredictedAffinity Capture-MS | FSW = 0.0897
| Unknown | HISTONE H3 |
AT5G55190 | Predictedinterologs mappinginterologs mappinginterologs mappinginterologs mappingAffinity Capture-MSAffinity Capture-MSinterologs mappingAffinity Capture-MSSynthetic LethalityColocalizationReconstituted Complex | FSW = 0.1080
| Unknown | RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT1G69680 | PredictedSynthetic Lethality | FSW = 0.0916
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MOG1/PSBP/DUF1795 ALPHA/BETA/ALPHA SANDWICH (INTERPROIPR016124) RAN-INTERACTING MOG1 PROTEIN (INTERPROIPR007681) MOG1/PSBP ALPHA/BETA/ALPHA SANDWICH (INTERPROIPR016123) HAS 202 BLAST HITS TO 202 PROTEINS IN 100 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 55 FUNGI - 83 PLANTS - 25 VIRUSES - 0 OTHER EUKARYOTES - 39 (SOURCE NCBI BLINK) |
AT2G17510 | PredictedReconstituted Complex | FSW = 0.0054
| Unknown | EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE |
AT3G15970 | PredictedAffinity Capture-WesternSynthetic Lethalityinteraction prediction | FSW = 0.0740
| Unknown | RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN |
AT4G01560 | PredictedColocalization | FSW = 0.0060
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
AT3G09560 | PredictedPhenotypic Enhancementinterologs mappingtwo hybrid | FSW = 0.0465
| Unknown | LIPIN FAMILY PROTEIN |
AT1G52380 | PredictedAffinity Capture-WesternSynthetic Lethality | FSW = 0.0554
| Unknown | RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN |
AT2G02630 | PredictedGene fusion method | FSW = 0.0186
| Unknown | DC1 DOMAIN-CONTAINING PROTEIN |
AT5G54590 | PredictedGene fusion method | FSW = 0.0429
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G17530 | PredictedGene fusion method | FSW = 0.0379
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G77670 | PredictedGene fusion method | FSW = 0.0418
| Unknown | AMINOTRANSFERASE CLASS I AND II FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454