Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G42520 - ( DEAD box RNA helicase putative )
39 Proteins interacs with AT2G42520| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G22290
   | Experimentalpull down | FSW = 0.0404
| Class B:peroxisomenucleuscytosolClass D:cytosol (p = 0.67) | ANAC089 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 89) TRANSCRIPTION FACTOR |
| AT3G58510
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.3913
| Class C:peroxisome | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
| AT1G72730
| PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
| AT1G54270
| PredictedSynthetic LethalitySynthetic LethalityEnriched domain pairCo-expression | FSW = 0.0323
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
| AT5G25780
| PredictedAffinity Capture-MS | FSW = 0.0622
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
| AT3G03920
| PredictedAffinity Capture-MS | FSW = 0.0353
| Unknown | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
| AT4G34620
| PredictedAffinity Capture-MS | FSW = 0.0204
| Unknown | SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G80070
| PredictedSynthetic Rescue | FSW = 0.0155
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
| AT5G60790
| PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0296
| Unknown | ATGCN1 TRANSPORTER |
| AT3G11400
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0711
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G |
| AT1G03930
| PredictedAffinity Capture-MS | FSW = 0.0412
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
| AT2G45640
| PredictedAffinity Capture-MS | FSW = 0.0299
| Unknown | SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18) PROTEIN BINDING / TRANSCRIPTION REGULATOR |
| AT3G05060
| PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | SAR DNA-BINDING PROTEIN PUTATIVE |
| AT1G04510
| PredictedCo-purification | FSW = 0.0147
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G48920
| PredictedAffinity Capture-MS | FSW = 0.0617
| Unknown | ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT3G03600
| PredictedAffinity Capture-MS | FSW = 0.0215
| Unknown | RPS2 (RIBOSOMAL PROTEIN S2) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G24000
| PredictedGene fusion method | FSW = 0.0272
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN SHOOT APEX CARPEL EXPRESSED DURING PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT3G233301) HAS 15874 BLAST HITS TO 5333 PROTEINS IN 187 SPECIES ARCHAE - 1 BACTERIA - 6 METAZOA - 100 FUNGI - 81 PLANTS - 15349 VIRUSES - 0 OTHER EUKARYOTES - 337 (SOURCE NCBI BLINK) |
| AT5G63860
| PredictedSynthetic Rescue | FSW = 0.0167
| Unknown | UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| AT5G59410
| PredictedAffinity Capture-MS | FSW = 0.0190
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RAB5-INTERACTING (INTERPROIPR010742) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RAB5-INTERACTING FAMILY PROTEIN (TAIRAT2G290201) HAS 154 BLAST HITS TO 154 PROTEINS IN 67 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 108 FUNGI - 0 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
| AT5G41190
| PredictedAffinity Capture-MS | FSW = 0.0213
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
| AT3G51270
| PredictedAffinity Capture-MS | FSW = 0.0728
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE |
| AT1G42440
| PredictedAffinity Capture-MS | FSW = 0.0821
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
| AT3G60240
| PredictedAffinity Capture-MS | FSW = 0.0472
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
| AT2G40700
| PredictedAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.0289
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH17) |
| AT1G79150
| PredictedAffinity Capture-MS | FSW = 0.0155
| Unknown | BINDING |
| AT1G71350
| PredictedAffinity Capture-MS | FSW = 0.0644
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN |
| AT1G59760
| PredictedAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.0323
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
| AT1G07990
| PredictedAffinity Capture-MS | FSW = 0.0661
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
| AT2G03820
| PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN |
| AT5G40490
| PredictedAffinity Capture-MS | FSW = 0.0390
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT5G22110
| PredictedAffinity Capture-MS | FSW = 0.0473
| Unknown | ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING |
| AT3G22860
| PredictedAffinity Capture-MS | FSW = 0.0454
| Unknown | TIF3C2 TRANSLATION INITIATION FACTOR |
| AT3G11910
| PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
| AT2G28820 | PredictedAffinity Capture-MS | FSW = 0.0310
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
| AT1G36730
| PredictedAffinity Capture-MS | FSW = 0.0803
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
| AT1G02010
| PredictedAffinity Capture-MS | FSW = 0.0428
| Unknown | SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER |
| AT5G41010
| Predictedinterologs mapping | FSW = 0.0226
| Unknown | NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT1G29550
| Predictedinterologs mappinginterologs mappingSynthetic Lethality | FSW = 0.0745
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE |
| AT2G45810
| PredictedSynthetic LethalityEnriched domain pairCo-expression | FSW = 0.0441
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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