Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G45640 - ( SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18) protein binding / transcription regulator )
24 Proteins interacs with AT2G45640Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G38130 | Experimentaltwo hybridin vitropull downReconstituted Complex | FSW = 0.0351
| Class A:nucleusClass D:nucleus (p = 0.78) | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
AT3G15210 | Experimentalin vitrotwo hybridpull downReconstituted Complex | FSW = 0.0290
| Class A:nucleusClass D:nucleus (p = 0.78) | ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR |
AT1G50640 | Experimentalin vitrotwo hybridpull downReconstituted Complex | FSW = 0.2143
| Class D:plastid (p = 0.78)nucleus (p = 0.78)mitochondrion (p = 0.82) | ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR |
AT5G66680 | PredictedAffinity Capture-MS | FSW = 0.0060
| Class C:nucleus | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT5G35620 | Predictedtwo hybrid | FSW = 0.0395
| Class C:nucleus | LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1) RNA 7-METHYLGUANOSINE CAP BINDING / RNA BINDING / TRANSLATION INITIATION FACTOR |
AT5G60410 | Predictedtwo hybrid | FSW = 0.0559
| Class C:nucleus | SIZ1 DNA BINDING / SUMO LIGASE |
AT4G04910 | PredictedAffinity Capture-MS | FSW = 0.0079
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G37020 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0381
| Unknown | DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT5G64740 | Predictedtwo hybrid | FSW = 0.0219
| Unknown | CESA6 (CELLULOSE SYNTHASE 6) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT2G46170 | Predictedtwo hybridtwo hybrid | FSW = 0.0345
| Unknown | RETICULON FAMILY PROTEIN (RTNLB5) |
AT5G41600 | Predictedtwo hybrid | FSW = 0.0395
| Unknown | BTI3 (VIRB2-INTERACTING PROTEIN 3) |
AT3G57290 | PredictedAffinity Capture-MS | FSW = 0.0228
| Unknown | EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) TRANSLATION INITIATION FACTOR |
AT1G44790 | Predictedtwo hybridtwo hybrid | FSW = 0.0989
| Unknown | CHAC-LIKE FAMILY PROTEIN |
AT2G42520 | PredictedAffinity Capture-MS | FSW = 0.0299
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT5G26220 | Predictedtwo hybrid | FSW = 0.0726
| Unknown | CHAC-LIKE FAMILY PROTEIN |
AT5G02730 | Predictedtwo hybrid | FSW = 0.0067
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33720 | Predictedtwo hybrid | FSW = 0.0121
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G46220 | Predictedtwo hybridtwo hybrid | FSW = 0.0228
| Unknown | UNKNOWN PROTEIN |
AT5G09880 | Predictedtwo hybrid | FSW = 0.0247
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G70060 | PredictedReconstituted Complex | FSW = 0.0677
| Unknown | SNL4 (SIN3-LIKE 4) |
AT2G33840 | PredictedAffinity Capture-MS | FSW = 0.0539
| Unknown | TRNA SYNTHETASE CLASS I (W AND Y) FAMILY PROTEIN |
AT5G22110 | Predictedtwo hybrid | FSW = 0.0286
| Unknown | ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING |
AT5G15020 | PredictedReconstituted Complex | FSW = 0.0219
| Unknown | SNL2 (SIN3-LIKE 2) |
AT2G16940 | Predictedtwo hybrid | FSW = 0.0395
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454