Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G22110 - ( ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA binding / DNA-directed DNA polymerase/ nucleic acid binding )
41 Proteins interacs with AT5G22110Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G10470 | Experimentaltwo hybrid | FSW = 0.0260
| Unknown | ARR4 (RESPONSE REGULATOR 4) PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT4G31700 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G17360 | PredictedAffinity Capture-MS | FSW = 0.0294
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT5G25780 | PredictedAffinity Capture-MS | FSW = 0.0217
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT2G06510 | PredictedAffinity Capture-Western | FSW = 0.0908
| Unknown | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT1G07790 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | HTB1 DNA BINDING |
AT4G13430 | PredictedAffinity Capture-MS | FSW = 0.0280
| Unknown | IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1) 4 IRON 4 SULFUR CLUSTER BINDING / HYDRO-LYASE/ LYASE |
AT1G80190 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0507
| Unknown | PSF1 (PARTNER OF SLD FIVE 1) |
AT3G58510 | PredictedAffinity Capture-MS | FSW = 0.0533
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
AT3G48750 | Predictedbiochemicalbiochemicalinteraction prediction | FSW = 0.0131
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G47700 | Predictedtwo hybridtwo hybrid | FSW = 0.0195
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1C) |
AT2G42520 | PredictedAffinity Capture-MS | FSW = 0.0473
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0375
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT1G63810 | PredictedAffinity Capture-MS | FSW = 0.0313
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
AT2G45640 | Predictedtwo hybrid | FSW = 0.0286
| Unknown | SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18) PROTEIN BINDING / TRANSCRIPTION REGULATOR |
AT4G02070 | PredictedPhenotypic Enhancement | FSW = 0.0484
| Unknown | MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING |
AT1G10300 | PredictedAffinity Capture-MS | FSW = 0.0556
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT5G54910 | PredictedAffinity Capture-MS | FSW = 0.0908
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G07050 | PredictedAffinity Capture-MS | FSW = 0.0361
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT5G66130 | PredictedAffinity Capture-Western | FSW = 0.0533
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT1G50920 | PredictedAffinity Capture-MS | FSW = 0.0430
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT3G12530 | PredictedAffinity Capture-Western | FSW = 0.0221
| Unknown | PSF2 |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0073
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT4G08320 | Predictedtwo hybridtwo hybrid | FSW = 0.0157
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT5G24510 | Predictedtwo hybrid | FSW = 0.0186
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE |
AT1G08260 | Predictedtwo hybridtwo hybridtwo hybridSynthetic LethalityReconstituted Complexinterologs mappingCo-purificationCo-purificationco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-WesternCo-purificationAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-Westerntwo hybridtwo hybridAffinity Capture-MStwo hybridAffinity Capture-MSReconstituted ComplexPhenotypic EnhancementAffinity Capture-WesternCo-purificationco-fractionationinterologs mappingSynthetic LethalityCo-crystal Structure | FSW = 0.1050
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G49760 | PredictedAffinity Capture-MS | FSW = 0.0226
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT2G20280 | PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT2G34357 | PredictedAffinity Capture-MS | FSW = 0.0296
| Unknown | BINDING |
AT2G40430 | PredictedAffinity Capture-MS | FSW = 0.1113
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK) |
AT3G18860 | PredictedAffinity Capture-MS | FSW = 0.0103
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G12620 | PredictedAffinity Capture-MS | FSW = 0.0635
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT1G04730 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0493
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT2G20980 | Predictedsynthetic growth defect | FSW = 0.1379
| Unknown | MCM10 |
AT3G25100 | PredictedAffinity Capture-Western | FSW = 0.0722
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT5G53770 | Predictedinterologs mapping | FSW = 0.0316
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT5G46840 | PredictedAffinity Capture-MS | FSW = 0.0492
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G19080 | PredictedColocalization | FSW = 0.2143
| Unknown | TTN10 (TITAN 10) |
AT1G22760 | PredictedAffinity Capture-MS | FSW = 0.0208
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT3G53650 | Predictedinteraction prediction | FSW = 0.0186
| Unknown | HISTONE H2B PUTATIVE |
AT2G27120 | Predictedinteraction prediction | FSW = 0.1652
| Unknown | TIL2 (TILTED 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454