Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G31700 - ( RPS6 (RIBOSOMAL PROTEIN S6) structural constituent of ribosome )
57 Proteins interacs with AT4G31700| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G49910
   | PredictedAffinity Capture-MS | FSW = 0.2989
| Class C:vacuoleplastidplasma membranenucleus | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
| AT2G18020
| PredictedAffinity Capture-MS | FSW = 0.4644
| Class C:vacuoleplastidplasma membranenucleus | EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G09630
| PredictedAffinity Capture-MS | FSW = 0.2357
| Class C:vacuoleplastidplasma membranenucleus | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
| AT2G42740
| PredictedAffinity Capture-MS | FSW = 0.4622
| Class C:vacuoleplastidplasma membranenucleus | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G09200
| PredictedAffinity Capture-MS | FSW = 0.2086
| Class C:vacuoleplastidplasma membranenucleus | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
| AT2G17360
| PredictedAffinity Capture-MS | FSW = 0.2621
| Class C:vacuoleplastidplasma membrane | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
| AT2G47610
| PredictedAffinity Capture-MS | FSW = 0.3039
| Class C:vacuoleplastidnucleus | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT5G15200
| PredictedAffinity Capture-MS | FSW = 0.3374
| Class C:vacuoleplastidnucleus | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
| AT3G04920
| PredictedAffinity Capture-MS | FSW = 0.5387
| Class C:vacuoleplasma membranenucleus | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
| AT3G49010
| PredictedAffinity Capture-MS | FSW = 0.3098
| Class C:vacuoleplasma membranenucleus | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G37270
| PredictedAffinity Capture-MS | FSW = 0.3794
| Class C:vacuoleplasma membrane | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G34480
| PredictedAffinity Capture-MS | FSW = 0.4021
| Class C:vacuoleplasma membrane | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
| AT1G66580
| PredictedAffinity Capture-MS | FSW = 0.4488
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
| AT5G20290
| PredictedAffinity Capture-MS | FSW = 0.3580
| Class C:plastidplasma membranenucleus | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
| AT1G48830
| PredictedAffinity Capture-MS | FSW = 0.4290
| Class C:plastidplasma membrane | 40S RIBOSOMAL PROTEIN S7 (RPS7A) |
| AT3G13580
| PredictedAffinity Capture-MS | FSW = 0.3371
| Class C:plastid | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
| AT3G58510
| PredictedAffinity Capture-MS | FSW = 0.1485
| Class C:plasma membranenucleus | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
| AT3G11510
| PredictedAffinity Capture-MS | FSW = 0.4838
| Class C:plasma membranenucleus | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
| AT4G00100
| PredictedAffinity Capture-MS | FSW = 0.4088
| Class C:plasma membranenucleus | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G34670
| PredictedAffinity Capture-MS | FSW = 0.4137
| Class C:plasma membranenucleus | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
| AT1G70600
| PredictedAffinity Capture-MS | FSW = 0.4654
| Class C:plasma membrane | STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G02230
| PredictedAffinity Capture-MS | FSW = 0.3832
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L19 (RPL19C) |
| AT3G25800
| PredictedAffinity Capture-MS | FSW = 0.0046
| Class C:plasma membrane | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
| AT4G26110
| PredictedAffinity Capture-MS | FSW = 0.0141
| Class C:plasma membrane | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
| AT4G23460
| PredictedAffinity Capture-MS | FSW = 0.0356
| Class C:plasma membrane | BETA-ADAPTIN PUTATIVE |
| AT3G53870
| PredictedAffinity Capture-MS | FSW = 0.3519
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
| AT4G15000
| PredictedAffinity Capture-MS | FSW = 0.3528
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
| AT5G10360
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1323
| Class C:plasma membrane | EMB3010 (EMBRYO DEFECTIVE 3010) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G77840
| PredictedAffinity Capture-MS | FSW = 0.1559
| Class C:nucleus | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
| AT5G04600
| PredictedAffinity Capture-MS | FSW = 0.1742
| Class C:nucleus | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT4G17390
| PredictedAffinity Capture-MS | FSW = 0.4596
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
| AT1G74060
| PredictedAffinity Capture-MS | FSW = 0.3444
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
| AT3G54350
| Predictedtwo hybrid | FSW = 0.0313
| Class C:nucleus | EMB1967 (EMBRYO DEFECTIVE 1967) |
| AT5G66540
| PredictedAffinity Capture-Western | FSW = 0.1253
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK) |
| AT5G58420
| PredictedAffinity Capture-MS | FSW = 0.4546
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S4 (RPS4D) |
| AT5G48870
| Predictedtwo hybridinteraction prediction | FSW = 0.0111
| Class C:nucleus | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
| AT4G23900
| PredictedAffinity Capture-MS | FSW = 0.0529
| Unknown | NUCLEOSIDE DIPHOSPHATE KINASE 4 (NDK4) |
| AT4G35260
| PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | IDH1 (ISOCITRATE DEHYDROGENASE 1) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
| AT4G17620
| PredictedAffinity Capture-MS | FSW = 0.2532
| Unknown | GLYCINE-RICH PROTEIN |
| AT5G59240
| PredictedAffinity Capture-MS | FSW = 0.4036
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8B) |
| AT5G09500
| PredictedAffinity Capture-MS | FSW = 0.3601
| Unknown | 40S RIBOSOMAL PROTEIN S15 (RPS15C) |
| AT1G61580
| PredictedAffinity Capture-MS | FSW = 0.3371
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G30800
| PredictedAffinity Capture-MS | FSW = 0.3247
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
| AT5G56710
| PredictedAffinity Capture-MS | FSW = 0.3219
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
| AT1G10490
| PredictedAffinity Capture-MS | FSW = 0.2410
| Unknown | UNKNOWN PROTEIN |
| AT4G36630
| Predictedtwo hybridtwo hybrid | FSW = 0.0761
| Unknown | EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR |
| AT5G11010
| Predictedtwo hybridtwo hybridCo-expression | FSW = 0.1492
| Unknown | PRE-MRNA CLEAVAGE COMPLEX-RELATED |
| AT1G08880
| PredictedAffinity Capture-MS | FSW = 0.0212
| Unknown | H2AXA DNA BINDING |
| AT1G31660
| PredictedAffinity Capture-MS | FSW = 0.1865
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
| AT1G42440
| PredictedAffinity Capture-MS | FSW = 0.1193
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
| AT1G54140
| PredictedSynthetic Lethality | FSW = 0.0049
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
| AT3G12670
| PredictedAffinity Capture-MS | FSW = 0.0283
| Unknown | EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC |
| AT3G55280
| PredictedAffinity Capture-MS | FSW = 0.3373
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G22110
| PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING |
| AT5G27620
| PredictedAffinity Capture-MS | FSW = 0.0040
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
| AT5G46190
| PredictedAffinity Capture-MS | FSW = 0.0930
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
| AT5G05700
| PredictedAffinity Capture-MS | FSW = 0.0166
| Unknown | ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1) ARGINYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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