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AT3G53870 - ( 40S ribosomal protein S3 (RPS3B) )

132 Proteins interacs with AT3G53870

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.3957	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT3G49910	Predicted Affinity Capture-MS	FSW = 0.2761	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G18020	Predicted biochemical Affinity Capture-MS	FSW = 0.3627	Class C: plasma membrane	EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G31700	Predicted Affinity Capture-MS	FSW = 0.3519	Class C: plasma membrane	RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted biochemical Affinity Capture-MS	FSW = 0.2613	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.4123	Class C: plasma membrane	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09200	Predicted Affinity Capture-MS	FSW = 0.2761	Class C: plasma membrane	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT2G36160	Predicted Affinity Capture-MS	FSW = 0.1078	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT2G01250	Predicted two hybrid	FSW = 0.0429	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L7 (RPL7B)
AT2G17360	Predicted Affinity Capture-MS	FSW = 0.2758	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT2G31610	Predicted Phylogenetic profile method	FSW = 0.2637	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3 (RPS3A)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.2930	Class C: plasma membrane	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G67430	Predicted Affinity Capture-MS	FSW = 0.4290	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.4030	Class C: plasma membrane	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480	Predicted Affinity Capture-MS	FSW = 0.2618	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.3639	Class C: plasma membrane	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G27850	Predicted Affinity Capture-MS	FSW = 0.1226	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L18 (RPL18C)
AT2G43160	Predicted interologs mapping	FSW = 0.0146	Class C: plasma membrane	EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN
AT5G13450	Predicted biochemical	FSW = 0.0159	Class C: plasma membrane	ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.3413	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT3G22890	Predicted two hybrid	FSW = 0.0143	Class C: plasma membrane	APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT1G48830	Predicted Affinity Capture-MS	FSW = 0.3298	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.3730	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT3G11510	Predicted Affinity Capture-MS	FSW = 0.4269	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT5G39740	Predicted Affinity Capture-MS	FSW = 0.1571	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.3321	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT4G00100	Predicted Affinity Capture-MS	FSW = 0.4048	Class C: plasma membrane	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G34670	Predicted Affinity Capture-MS	FSW = 0.3813	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT4G28950	Predicted biochemical	FSW = 0.0142	Class C: plasma membrane	ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING
AT5G62300	Predicted Affinity Capture-MS	FSW = 0.1189	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.3586	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT5G60790	Predicted Affinity Capture-MS	FSW = 0.0635	Class C: plasma membrane	ATGCN1 TRANSPORTER
AT1G70600	Predicted Affinity Capture-MS	FSW = 0.4290	Class C: plasma membrane	STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G76810	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1226	Class C: plasma membrane	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT4G02230	Predicted Affinity Capture-MS	FSW = 0.2884	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L19 (RPL19C)
AT4G15000	Predicted Affinity Capture-MS	FSW = 0.3002	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT4G22120	Predicted Phenotypic Suppression	FSW = 0.0163	Class C: plasma membrane	EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT3G02090	Predicted biochemical	FSW = 0.0068	Unknown	MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE
AT5G67500	Predicted Phenotypic Suppression	FSW = 0.0735	Unknown	VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL
AT5G15200	Predicted Affinity Capture-MS	FSW = 0.3614	Unknown	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT2G47610	Predicted Affinity Capture-MS	FSW = 0.2906	Unknown	60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT1G33140	Predicted Affinity Capture-MS	FSW = 0.3049	Unknown	PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G64790	Predicted Affinity Capture-MS	FSW = 0.0187	Unknown	BINDING
AT1G66580	Predicted Affinity Capture-MS	FSW = 0.4041	Unknown	60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT1G34030	Predicted Affinity Capture-MS	FSW = 0.2224	Unknown	40S RIBOSOMAL PROTEIN S18 (RPS18B)
AT4G28390	Predicted biochemical	FSW = 0.0083	Unknown	AAC3 (ADP/ATP CARRIER 3) ATPADP ANTIPORTER/ BINDING
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.2746	Unknown	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT5G36880	Predicted Affinity Capture-MS	FSW = 0.0181	Unknown	ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE
AT5G59690	Predicted Affinity Capture-MS	FSW = 0.0790	Unknown	HISTONE H4
AT2G39290	Predicted Synthetic Rescue interologs mapping Synthetic Rescue	FSW = 0.0401	Unknown	PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE
AT1G51040	Predicted Affinity Capture-MS	FSW = 0.0179	Unknown	PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.3243	Unknown	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT1G09830	Predicted Affinity Capture-MS	FSW = 0.0260	Unknown	PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (PUR2)
AT2G33340	Predicted Co-purification	FSW = 0.0346	Unknown	NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G10070	Predicted biochemical	FSW = 0.0196	Unknown	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT5G43900	Predicted Colocalization	FSW = 0.0551	Unknown	MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR
AT4G29510	Predicted interologs mapping	FSW = 0.0186	Unknown	PRMT11 (ARGININE METHYLTRANSFERASE 11) PROTEIN-ARGININE N-METHYLTRANSFERASE
AT1G77840	Predicted Affinity Capture-MS	FSW = 0.1111	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT5G57015	Predicted Affinity Capture-MS biochemical	FSW = 0.0317	Unknown	CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G54280	Predicted Affinity Capture-MS	FSW = 0.0415	Unknown	RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.3968	Unknown	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT4G19610	Predicted Affinity Capture-MS	FSW = 0.0432	Unknown	RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G29390	Predicted Affinity Capture-MS	FSW = 0.1873	Unknown	40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT2G41840	Predicted Affinity Capture-MS	FSW = 0.2092	Unknown	40S RIBOSOMAL PROTEIN S2 (RPS2C)
AT5G58420	Predicted Affinity Capture-MS	FSW = 0.3804	Unknown	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT5G35530	Predicted Phylogenetic profile method	FSW = 0.0055	Unknown	40S RIBOSOMAL PROTEIN S3 (RPS3C)
AT1G74060	Predicted Affinity Capture-MS	FSW = 0.3208	Unknown	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT5G60440	Predicted interologs mapping interologs mapping Synthetic Rescue	FSW = 0.0095	Unknown	AGL62 (AGAMOUS-LIKE 62) DNA BINDING / TRANSCRIPTION FACTOR
AT4G23900	Predicted Affinity Capture-MS	FSW = 0.0438	Unknown	NUCLEOSIDE DIPHOSPHATE KINASE 4 (NDK4)
AT2G39795	Predicted biochemical	FSW = 0.0115	Unknown	MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT1G01310	Predicted biochemical	FSW = 0.0070	Unknown	ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT1G50110	Predicted biochemical	FSW = 0.0296	Unknown	BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 6 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 6 (BCAT6)
AT2G16700	Predicted biochemical	FSW = 0.0070	Unknown	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5) ACTIN BINDING
AT1G52300	Predicted biochemical	FSW = 0.0151	Unknown	60S RIBOSOMAL PROTEIN L37 (RPL37B)
AT5G09500	Predicted Affinity Capture-MS	FSW = 0.3111	Unknown	40S RIBOSOMAL PROTEIN S15 (RPS15C)
AT5G52650	Predicted Affinity Capture-MS	FSW = 0.0756	Unknown	40S RIBOSOMAL PROTEIN S10 (RPS10C)
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.3846	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G30800	Predicted Affinity Capture-MS	FSW = 0.2997	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT4G17620	Predicted Affinity Capture-MS	FSW = 0.2071	Unknown	GLYCINE-RICH PROTEIN
AT5G59240	Predicted Affinity Capture-MS	FSW = 0.2758	Unknown	40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT4G26840	Predicted Affinity Capture-MS	FSW = 0.0534	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT1G10490	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2255	Unknown	UNKNOWN PROTEIN
AT3G03950	Predicted Phenotypic Suppression	FSW = 0.0452	Unknown	PROTEIN BINDING
AT4G17190	Predicted Affinity Capture-MS	FSW = 0.0184	Unknown	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G04480	Predicted biochemical	FSW = 0.0148	Unknown	60S RIBOSOMAL PROTEIN L23 (RPL23A)
AT1G10280	Predicted biochemical	FSW = 0.0220	Unknown	UNKNOWN PROTEIN
AT1G15440	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1017	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G20696	Predicted biochemical	FSW = 0.0066	Unknown	HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G22240	Predicted biochemical	FSW = 0.1041	Unknown	APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING
AT1G43910	Predicted biochemical	FSW = 0.0213	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G50090	Predicted interologs mapping	FSW = 0.0576	Unknown	AMINOTRANSFERASE CLASS IV FAMILY PROTEIN
AT1G68200	Predicted Affinity Capture-MS	FSW = 0.0095	Unknown	ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT1G80530	Predicted two hybrid	FSW = 0.0246	Unknown	NODULIN FAMILY PROTEIN
AT2G04660	Predicted interologs mapping Synthetic Rescue interologs mapping	FSW = 0.0211	Unknown	APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G19910	Predicted biochemical	FSW = 0.0119	Unknown	RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN
AT2G25100	Predicted biochemical	FSW = 0.0046	Unknown	RIBONUCLEASE HII FAMILY PROTEIN
AT2G35390	Predicted biochemical	FSW = 0.0133	Unknown	RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT2G45330	Predicted biochemical	FSW = 0.0204	Unknown	EMB1067 (EMBRYO DEFECTIVE 1067) TRNA 2-PHOSPHOTRANSFERASE/ TRANSFERASE TRANSFERRING PHOSPHORUS-CONTAINING GROUPS
AT1G03530	Predicted Affinity Capture-MS	FSW = 0.1465	Unknown	NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT1G08880	Predicted Affinity Capture-MS	FSW = 0.0209	Unknown	H2AXA DNA BINDING
AT1G09150	Predicted Affinity Capture-MS	FSW = 0.0381	Unknown	PSEUDOURIDINE SYNTHASE AND ARCHAEOSINE TRANSGLYCOSYLASE (PUA) DOMAIN-CONTAINING PROTEIN
AT1G10210	Predicted biochemical	FSW = 0.0351	Unknown	ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G16280	Predicted Affinity Capture-MS	FSW = 0.0881	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G31660	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1937	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G32750	Predicted Affinity Capture-MS	FSW = 0.0081	Unknown	HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE
AT1G55060	Predicted Phenotypic Enhancement	FSW = 0.0237	Unknown	UBQ12 (UBIQUITIN 12) PROTEIN BINDING
AT1G55810	Predicted synthetic growth defect	FSW = 0.0037	Unknown	URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT1G57660	Predicted Affinity Capture-MS	FSW = 0.2732	Unknown	60S RIBOSOMAL PROTEIN L21 (RPL21E)
AT2G19540	Predicted Affinity Capture-MS	FSW = 0.0314	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G27200	Predicted Affinity Capture-MS	FSW = 0.0883	Unknown	GTP-BINDING FAMILY PROTEIN
AT2G32050	Predicted interologs mapping	FSW = 0.0345	Unknown	CELL CYCLE CONTROL PROTEIN-RELATED
AT3G01160	Predicted Affinity Capture-MS	FSW = 0.0661	Unknown	UNKNOWN PROTEIN
AT3G11450	Predicted Affinity Capture-MS	FSW = 0.0715	Unknown	DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED
AT3G24080	Predicted Affinity Capture-MS	FSW = 0.1070	Unknown	KRR1 FAMILY PROTEIN
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.3173	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G51270	Predicted co-fractionation Co-fractionation	FSW = 0.0926	Unknown	ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT3G56510	Predicted Affinity Capture-MS	FSW = 0.0600	Unknown	TBP-BINDING PROTEIN PUTATIVE
AT4G38630	Predicted Affinity Capture-MS	FSW = 0.0279	Unknown	RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G08420	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1506	Unknown	RNA BINDING
AT5G20600	Predicted Affinity Capture-MS	FSW = 0.0293	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT5G41190	Predicted Affinity Capture-MS	FSW = 0.0438	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G55190	Predicted Affinity Capture-MS	FSW = 0.0046	Unknown	RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G66610	Predicted Colocalization	FSW = 0.0413	Unknown	DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.3406	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G57140	Predicted biochemical	FSW = 0.0216	Unknown	PATATIN-RELATED
AT4G19645	Predicted biochemical	FSW = 0.0157	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK)
AT4G20320	Predicted Affinity Capture-MS	FSW = 0.0165	Unknown	CTP SYNTHASE/ CATALYTIC
AT4G31590	Predicted biochemical	FSW = 0.0079	Unknown	ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT5G15070	Predicted Affinity Capture-MS	FSW = 0.0084	Unknown	ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT5G17000	Predicted biochemical	FSW = 0.0202	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G37350	Predicted two hybrid	FSW = 0.0329	Unknown	RIO1 FAMILY PROTEIN
AT5G38030	Predicted Synthetic Rescue	FSW = 0.0370	Unknown	MATE EFFLUX FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT3G53870 - ( 40S ribosomal protein S3 (RPS3B) )

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