Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G25100 - ( ribonuclease HII family protein )
23 Proteins interacs with AT2G25100Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G22940 | Predictedpull down | FSW = 0.0410
| Unknown | TH1 (THIAMINE REQUIRING 1) HYDROXYMETHYLPYRIMIDINE KINASE/ PHOSPHOMETHYLPYRIMIDINE KINASE/ THIAMIN-PHOSPHATE DIPHOSPHORYLASE |
AT2G36380 | PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | PDR6 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G53870 | Predictedbiochemical | FSW = 0.0046
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT3G46900 | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT4G18880 | PredictedAffinity Capture-MS | FSW = 0.0310
| Unknown | AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR |
AT5G66760 | Predictedpull down | FSW = 0.0147
| Unknown | SDH1-1 ATP BINDING / SUCCINATE DEHYDROGENASE |
AT2G31970 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.0530
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G18380 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16C) |
AT4G04610 | Predictedpull down | FSW = 0.0315
| Unknown | APR1 (APS REDUCTASE 1) ADENYLYL-SULFATE REDUCTASE |
AT5G20850 | Predictedsynthetic growth defect | FSW = 0.0390
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT4G29540 | Predictedpull down | FSW = 0.0246
| Unknown | BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN |
AT4G31870 | Predictedpull down | FSW = 0.0342
| Unknown | ATGPX7 (GLUTATHIONE PEROXIDASE 7) GLUTATHIONE PEROXIDASE |
AT1G55300 | PredictedPhenotypic Enhancement | FSW = 0.0097
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G04730 | Predictedsynthetic growth defectCo-expression | FSW = 0.0413
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G08840 | PredictedSynthetic Lethality | FSW = 0.1405
| Unknown | EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING |
AT1G10930 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.0690
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT2G14880 | PredictedAffinity Capture-MS | FSW = 0.0137
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT3G42660 | Predictedsynthetic growth defectCo-expression | FSW = 0.0663
| Unknown | NUCLEOTIDE BINDING |
AT5G03430 | PredictedAffinity Capture-MS | FSW = 0.0368
| Unknown | PHOSPHOADENOSINE PHOSPHOSULFATE (PAPS) REDUCTASE FAMILY PROTEIN |
AT5G25520 | PredictedSynthetic Lethality | FSW = 0.0580
| Unknown | TRANSCRIPTION ELONGATION FACTOR-RELATED |
AT5G26680 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0564
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G44740 | Predictedbiochemical | FSW = 0.0110
| Unknown | POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE |
AT3G10070 | PredictedPhenotypic Enhancement | FSW = 0.0371
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454