Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G18380 - ( 40S ribosomal protein S16 (RPS16C) )

52 Proteins interacs with AT5G18380
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G11260

Predicted

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0236

Unknown

STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G37640

Predicted

Affinity Capture-MS

FSW = 0.0153

Unknown

UBQ9 PROTEIN BINDING
AT5G23670

Predicted

two hybrid

FSW = 0.0097

Unknown

LCB2 PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE
AT3G23340

Predicted

Affinity Capture-MS

FSW = 0.0306

Unknown

CKL10 (CASEIN KINASE I-LIKE 10) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G09990

Predicted

Gene fusion method

Phylogenetic profile method

FSW = 0.0608

Unknown

40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT3G04230

Predicted

Gene fusion method

Phylogenetic profile method

FSW = 0.0350

Unknown

40S RIBOSOMAL PROTEIN S16 (RPS16B)
AT3G11510

Predicted

Affinity Capture-MS

FSW = 0.0384

Unknown

40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT5G62880

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

FSW = 0.1285

Unknown

ARAC10 GTP BINDING
AT3G13560

Predicted

co-fractionation

Co-fractionation

Affinity Capture-MS

Reconstituted Complex

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-Western

co-fractionation

Co-fractionation

Synthetic Lethality

Phenotypic Suppression

interologs mapping

FSW = 0.1330

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT2G18180

Predicted

Affinity Capture-Western

FSW = 0.0936

Unknown

SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHOGLYCERIDE TRANSFER PROTEIN PUTATIVE
AT2G37600

Predicted

Affinity Capture-MS

FSW = 0.0411

Unknown

60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT2G36380

Predicted

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0507

Unknown

PDR6 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT4G35020

Predicted

two hybrid

FSW = 0.0398

Unknown

ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE
AT4G33090

Predicted

two hybrid

FSW = 0.0055

Unknown

APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT4G02050

Predicted

Affinity Capture-Western

FSW = 0.0626

Unknown

SUGAR TRANSPORTER PUTATIVE
AT5G22770

Predicted

Affinity Capture-MS

FSW = 0.0179

Unknown

ALPHA-ADR (ALPHA-ADAPTIN) BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER
AT4G14350

Predicted

Affinity Capture-MS

FSW = 0.0093

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G70580

Predicted

Affinity Capture-Western

FSW = 0.0254

Unknown

AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE
AT1G02680

Predicted

Affinity Capture-MS

co-fractionation

Co-fractionation

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

co-fractionation

Co-fractionation

FSW = 0.0399

Unknown

TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G72440

Predicted

Affinity Capture-MS

FSW = 0.0247

Unknown

EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT5G05210

Predicted

two hybrid

FSW = 0.0821

Unknown

NUCLEOLAR MATRIX PROTEIN-RELATED
AT3G62310

Predicted

Affinity Capture-MS

FSW = 0.0378

Unknown

RNA HELICASE PUTATIVE
AT4G23900

Predicted

Affinity Capture-MS

FSW = 0.0108

Unknown

NUCLEOSIDE DIPHOSPHATE KINASE 4 (NDK4)
AT4G07820

Predicted

Synthetic Lethality

FSW = 0.0362

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT4G00900

Predicted

two hybrid

FSW = 0.0153

Unknown

ECA2 (ER-TYPE CA2+-ATPASE 2) CALCIUM-TRANSPORTING ATPASE
AT1G10490

Predicted

Affinity Capture-MS

FSW = 0.0305

Unknown

UNKNOWN PROTEIN
AT3G28730

Predicted

Synthetic Lethality

FSW = 0.0189

Unknown

ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT4G29430

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

FSW = 0.1275

Unknown

RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G39910

Predicted

Affinity Capture-MS

FSW = 0.0162

Unknown

ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3) UBIQUITIN-SPECIFIC PROTEASE
AT1G05180

Predicted

Affinity Capture-MS

FSW = 0.0196

Unknown

AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME
AT4G10920

Predicted

Affinity Capture-MS

Reconstituted Complex

Reconstituted Complex

two hybrid

two hybrid

Affinity Capture-Western

Reconstituted Complex

Reconstituted Complex

two hybrid

Affinity Capture-MS

Reconstituted Complex

Synthetic Rescue

Affinity Capture-Western

FSW = 0.0796

Unknown

KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR
AT1G67420

Predicted

two hybrid

FSW = 0.0323

Unknown

PEPTIDASE
AT1G18660

Predicted

two hybrid

FSW = 0.0214

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G42190

Predicted

two hybrid

FSW = 0.0035

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G34770

Predicted

Affinity Capture-MS

FSW = 0.0066

Unknown

MAGE-8 ANTIGEN-RELATED
AT2G17870

Predicted

Affinity Capture-MS

FSW = 0.0139

Unknown

COLD-SHOCK DNA-BINDING FAMILY PROTEIN
AT4G34910

Predicted

Affinity Capture-MS

FSW = 0.0254

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH16)
AT1G12730

Predicted

Affinity Capture-MS

FSW = 0.0247

Unknown

CELL DIVISION CYCLE PROTEIN-RELATED
AT1G15440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0396

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G25083Predicted

Affinity Capture-MS

FSW = 0.0364

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G63370

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0886

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT1G80460

Predicted

Dosage Growth Defect

Reconstituted Complex

FSW = 0.0933

Unknown

NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE
AT2G25100

Predicted

Affinity Capture-MS

FSW = 0.0238

Unknown

RIBONUCLEASE HII FAMILY PROTEIN
AT4G10480

Predicted

Affinity Capture-MS

FSW = 0.0207

Unknown

NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA CHAIN PROTEIN PUTATIVE / ALPHA-NAC PUTATIVE
AT4G12790

Predicted

Affinity Capture-MS

FSW = 0.0126

Unknown

ATP-BINDING FAMILY PROTEIN
AT4G14670

Predicted

Affinity Capture-MS

FSW = 0.0312

Unknown

CLPB2 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G04480Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0807

Unknown

60S RIBOSOMAL PROTEIN L23 (RPL23A)
AT1G25260

Predicted

two hybrid

FSW = 0.0235

Unknown

ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT4G27690

Predicted

Synthetic Rescue

FSW = 0.0660

Unknown

VPS26B (VACUOLAR PROTEIN SORTING 26B)
AT5G37830

Predicted

two hybrid

FSW = 0.0261

Unknown

OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE
AT5G59850Predicted

two hybrid

FSW = 0.0711

Unknown

40S RIBOSOMAL PROTEIN S15A (RPS15AF)
AT5G67380

Predicted

Affinity Capture-MS

FSW = 0.0072

Unknown

CKA1 (CASEIN KINASE ALPHA 1) KINASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454