Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G23670 - ( LCB2 protein binding / serine C-palmitoyltransferase )

27 Proteins interacs with AT5G23670
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G14960

Predicted

Affinity Capture-MS

FSW = 0.0303

Class C:

vacuole

TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G27980

Predicted

Phenotypic Suppression

FSW = 0.1377

Class C:

endoplasmic reticulum

DPL1 CARBOXY-LYASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING
AT1G67730

Predicted

Phenotypic Enhancement

FSW = 0.0097

Class C:

endoplasmic reticulum

YBR159 KETOREDUCTASE/ OXIDOREDUCTASE
AT4G36480

Predicted

in vivo

in vitro

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

interaction prediction

FSW = 0.1318

Class C:

endoplasmic reticulum

ATLCB1 (LONG-CHAIN BASE1) PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE
AT1G13980

Predicted

interaction prediction

FSW = 0.0909

Class C:

endoplasmic reticulum

GN (GNOM) GTPGDP ANTIPORTER/ PROTEIN HOMODIMERIZATION
AT3G02520

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0132

Unknown

GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G38480

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0190

Unknown

GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G17390

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0124

Unknown

MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE
AT1G05570

Predicted

interaction prediction

FSW = 0.0157

Unknown

CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT5G02490

Predicted

two hybrid

FSW = 0.0120

Unknown

HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2)
AT5G18380

Predicted

two hybrid

FSW = 0.0097

Unknown

40S RIBOSOMAL PROTEIN S16 (RPS16C)
AT5G56710

Predicted

two hybrid

FSW = 0.0151

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT2G02810

Predicted

two hybrid

FSW = 0.0889

Unknown

UTR1 (UDP-GALACTOSE TRANSPORTER 1) UDP-GALACTOSE TRANSMEMBRANE TRANSPORTER/ UDP-GLUCOSE TRANSMEMBRANE TRANSPORTER/ PYRIMIDINE NUCLEOTIDE SUGAR TRANSMEMBRANE TRANSPORTER
AT4G25950

Predicted

two hybrid

FSW = 0.0166

Unknown

VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT5G56360

Predicted

two hybrid

FSW = 0.0683

Unknown

CALMODULIN-BINDING PROTEIN
AT2G13680

Predicted

Affinity Capture-MS

FSW = 0.0103

Unknown

CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE
AT2G16950

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0560

Unknown

TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT2G34770

Predicted

Phenotypic Suppression

FSW = 0.0602

Unknown

FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE
AT3G03110

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0523

Unknown

XPO1B BINDING / PROTEIN TRANSPORTER
AT3G24090

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0308

Unknown

GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE
AT3G58490

Predicted

Phenotypic Enhancement

FSW = 0.1867

Unknown

PHOSPHATIDIC ACID PHOSPHATASE FAMILY PROTEIN / PAP2 FAMILY PROTEIN
AT3G62120

Predicted

Affinity Capture-MS

FSW = 0.1460

Unknown

TRNA SYNTHETASE CLASS II (G H P AND S) FAMILY PROTEIN
AT4G12460

Predicted

Phenotypic Enhancement

FSW = 0.0198

Unknown

ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B) OXYSTEROL BINDING
AT4G21540

Predicted

Synthetic Rescue

FSW = 0.1263

Unknown

SPHK1 (SPHINGOSINE KINASE 1) D-ERYTHRO-SPHINGOSINE KINASE/ DIACYLGLYCEROL KINASE/ SPHINGANINE KINASE
AT4G27640

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0389

Unknown

IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN
AT5G19610

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2333

Unknown

SEC7 DOMAIN-CONTAINING PROTEIN
AT3G48780

Predicted

Gene fusion method

Phylogenetic profile method

FSW = 0.4025

Unknown

SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454