Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G23670 - ( LCB2 protein binding / serine C-palmitoyltransferase )
27 Proteins interacs with AT5G23670Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G14960 | PredictedAffinity Capture-MS | FSW = 0.0303
| Class C:vacuole | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G27980 | PredictedPhenotypic Suppression | FSW = 0.1377
| Class C:endoplasmic reticulum | DPL1 CARBOXY-LYASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING |
AT1G67730 | PredictedPhenotypic Enhancement | FSW = 0.0097
| Class C:endoplasmic reticulum | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT4G36480 | Predictedin vivoin vitroAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSReconstituted Complexinteraction prediction | FSW = 0.1318
| Class C:endoplasmic reticulum | ATLCB1 (LONG-CHAIN BASE1) PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE |
AT1G13980 | Predictedinteraction prediction | FSW = 0.0909
| Class C:endoplasmic reticulum | GN (GNOM) GTPGDP ANTIPORTER/ PROTEIN HOMODIMERIZATION |
AT3G02520 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0132
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G38480 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0190
| Unknown | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G17390 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0124
| Unknown | MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE |
AT1G05570 | Predictedinteraction prediction | FSW = 0.0157
| Unknown | CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT5G02490 | Predictedtwo hybrid | FSW = 0.0120
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT5G18380 | Predictedtwo hybrid | FSW = 0.0097
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16C) |
AT5G56710 | Predictedtwo hybrid | FSW = 0.0151
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
AT2G02810 | Predictedtwo hybrid | FSW = 0.0889
| Unknown | UTR1 (UDP-GALACTOSE TRANSPORTER 1) UDP-GALACTOSE TRANSMEMBRANE TRANSPORTER/ UDP-GLUCOSE TRANSMEMBRANE TRANSPORTER/ PYRIMIDINE NUCLEOTIDE SUGAR TRANSMEMBRANE TRANSPORTER |
AT4G25950 | Predictedtwo hybrid | FSW = 0.0166
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G56360 | Predictedtwo hybrid | FSW = 0.0683
| Unknown | CALMODULIN-BINDING PROTEIN |
AT2G13680 | PredictedAffinity Capture-MS | FSW = 0.0103
| Unknown | CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE |
AT2G16950 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0560
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT2G34770 | PredictedPhenotypic Suppression | FSW = 0.0602
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT3G03110 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0523
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT3G24090 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0308
| Unknown | GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE |
AT3G58490 | PredictedPhenotypic Enhancement | FSW = 0.1867
| Unknown | PHOSPHATIDIC ACID PHOSPHATASE FAMILY PROTEIN / PAP2 FAMILY PROTEIN |
AT3G62120 | PredictedAffinity Capture-MS | FSW = 0.1460
| Unknown | TRNA SYNTHETASE CLASS II (G H P AND S) FAMILY PROTEIN |
AT4G12460 | PredictedPhenotypic Enhancement | FSW = 0.0198
| Unknown | ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B) OXYSTEROL BINDING |
AT4G21540 | PredictedSynthetic Rescue | FSW = 0.1263
| Unknown | SPHK1 (SPHINGOSINE KINASE 1) D-ERYTHRO-SPHINGOSINE KINASE/ DIACYLGLYCEROL KINASE/ SPHINGANINE KINASE |
AT4G27640 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0389
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT5G19610 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2333
| Unknown | SEC7 DOMAIN-CONTAINING PROTEIN |
AT3G48780 | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.4025
| Unknown | SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454