Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G12460 - ( ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B) oxysterol binding )
24 Proteins interacs with AT4G12460Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G17360 | PredictedAffinity Capture-MS | FSW = 0.0130
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT2G45200 | PredictedPhenotypic Enhancement | FSW = 0.0159
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT5G23670 | PredictedPhenotypic Enhancement | FSW = 0.0198
| Unknown | LCB2 PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE |
AT5G25780 | PredictedAffinity Capture-MS | FSW = 0.0204
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT1G13440 | PredictedAffinity Capture-MS | FSW = 0.0476
| Unknown | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT5G10450 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0053
| Unknown | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G34200 | PredictedAffinity Capture-MS | FSW = 0.0726
| Unknown | EDA9 (EMBRYO SAC DEVELOPMENT ARREST 9) ATP BINDING |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.0036
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G59820 | PredictedPhenotypic Enhancement | FSW = 0.0942
| Unknown | ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0158
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G08820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1612
| Unknown | VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2) STRUCTURAL MOLECULE |
AT4G35020 | Predictedinterologs mapping | FSW = 0.0165
| Unknown | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
AT5G54110 | Predictedtwo hybridtwo hybridin vivoin vitro | FSW = 0.0726
| Unknown | ATMAMI (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED) STRUCTURAL MOLECULE |
AT4G11420 | PredictedAffinity Capture-MS | FSW = 0.0785
| Unknown | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
AT1G12920 | PredictedAffinity Capture-MS | FSW = 0.0736
| Unknown | ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2) TRANSLATION RELEASE FACTOR |
AT5G66020 | PredictedPhenotypic Enhancement | FSW = 0.0427
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT1G48160 | PredictedPhenotypic Enhancement | FSW = 0.0212
| Unknown | SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN PUTATIVE / SRP19 PUTATIVE |
AT3G28730 | PredictedAffinity Capture-MS | FSW = 0.0144
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT1G06080 | PredictedPhenotypic Enhancement | FSW = 0.0402
| Unknown | ADS1 (DELTA 9 DESATURASE 1) OXIDOREDUCTASE |
AT1G80410 | PredictedAffinity Capture-MS | FSW = 0.0078
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT4G05330 | PredictedPhenotypic Enhancement | FSW = 0.1103
| Unknown | AGD13 (ARF-GAP DOMAIN 13) ARF GTPASE ACTIVATOR/ ZINC ION BINDING |
AT4G22540 | PredictedAffinity Capture-MSPhenotypic Enhancement | FSW = 0.2212
| Unknown | ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A) OXYSTEROL BINDING / PHOSPHOINOSITIDE BINDING |
AT5G57240 | PredictedPhenotypic Enhancement | FSW = 0.0803
| Unknown | ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C) OXYSTEROL BINDING |
AT4G14390 | PredictedGene fusion method | FSW = 0.0593
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454