Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G58490 - ( phosphatidic acid phosphatase family protein / PAP2 family protein )
22 Proteins interacs with AT3G58490Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G23670 | PredictedPhenotypic Enhancement | FSW = 0.1867
| Unknown | LCB2 PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE |
AT3G61430 | PredictedAffinity Capture-Western | FSW = 0.0074
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT1G07670 | PredictedPhenotypic Enhancement | FSW = 0.0354
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0167
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G15080 | PredictedPhenotypic Enhancement | FSW = 0.1154
| Unknown | LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) ACID PHOSPHATASE/ PHOSPHATIDATE PHOSPHATASE |
AT1G10130 | Predictedinterologs mapping | FSW = 0.0149
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT1G27980 | PredictedSynthetic LethalityPhenotypic EnhancementPhenotypic Enhancementinterologs mappinginterologs mappingPhenotypic Enhancement | FSW = 0.3894
| Unknown | DPL1 CARBOXY-LYASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING |
AT4G36480 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1077
| Unknown | ATLCB1 (LONG-CHAIN BASE1) PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE |
AT1G01020 | PredictedPhenotypic Enhancement | FSW = 0.0621
| Unknown | ARV1 |
AT1G60730 | PredictedAffinity Capture-MS | FSW = 0.0112
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G69640 | PredictedPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defect | FSW = 0.2531
| Unknown | SBH1 (SPHINGOID BASE HYDROXYLASE 1) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT2G23070 | PredictedSynthetic Lethality | FSW = 0.0125
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G34770 | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.1066
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT3G24010 | Predictedsynthetic growth defect | FSW = 0.0108
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G53030 | Predictedsynthetic growth defect | FSW = 0.0141
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT4G17910 | PredictedPhenotypic Enhancement | FSW = 0.1553
| Unknown | TRANSFERASE TRANSFERRING ACYL GROUPS |
AT5G10480 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0832
| Unknown | PAS2 (PASTICCINO 2) ENOYL-COA HYDRATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT4G21540 | PredictedSynthetic Rescue | FSW = 0.3059
| Unknown | SPHK1 (SPHINGOSINE KINASE 1) D-ERYTHRO-SPHINGOSINE KINASE/ DIACYLGLYCEROL KINASE/ SPHINGANINE KINASE |
AT5G42000 | PredictedPhenotypic Suppression | FSW = 0.0483
| Unknown | ORMDL FAMILY PROTEIN |
AT1G14290 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1980
| Unknown | SBH2 (SPHINGOID BASE HYDROXYLASE 2) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT2G33735 | Predictedinterologs mapping | FSW = 0.1067
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT3G48780 | Predictedinterologs mapping | FSW = 0.1155
| Unknown | SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454