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AT4G14960 - ( TUA6 structural constituent of cytoskeleton )

94 Proteins interacs with AT4G14960

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G78300	Experimental	FSW = 0.0044	Class A: vacuole plasma membrane nucleus cytoskeleton Class B: unclear peroxisome cytosol Class D: cytosol (p = 0.67)	GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G28540	Experimental Reconstituted Complex biochemical in vitro	FSW = 0.0216	Class A: plasma membrane Class B: vacuole unclear nucleus cytoskeleton Class D: nucleus (p = 0.78)	CKL6 (CASEIN KINASE I-LIKE 6) KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G63400	Predicted two hybrid	FSW = 0.0053	Class C: vacuole unclear	ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT4G14880	Predicted Affinity Capture-MS	FSW = 0.0202	Class C: vacuole plasma membrane nucleus	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) CYSTEINE SYNTHASE
AT1G04820	Predicted Enriched domain pair Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.4945	Class C: vacuole plasma membrane	TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G56000	Predicted Affinity Capture-Western	FSW = 0.0118	Class C: vacuole plasma membrane	HEAT SHOCK PROTEIN 81-4 (HSP81-4)
AT5G23670	Predicted Affinity Capture-MS	FSW = 0.0303	Class C: vacuole	LCB2 PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE
AT3G07180	Predicted Affinity Capture-MS	FSW = 0.0167	Class C: vacuole	GPI TRANSAMIDASE COMPONENT PIG-S-RELATED
AT1G64790	Predicted Affinity Capture-MS	FSW = 0.0787	Class C: vacuole	BINDING
AT4G17140	Predicted Affinity Capture-MS	FSW = 0.0092	Class C: vacuole	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PLECKSTRIN HOMOLOGY (INTERPROIPR001849) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PHOSPHOINOSITIDE BINDING (TAIRAT1G480902) HAS 1924 BLAST HITS TO 1182 PROTEINS IN 161 SPECIES ARCHAE - 0 BACTERIA - 16 METAZOA - 911 FUNGI - 304 PLANTS - 271 VIRUSES - 0 OTHER EUKARYOTES - 422 (SOURCE NCBI BLINK)
AT5G62690	Predicted Enriched domain pair Gene fusion method	FSW = 0.1692	Class C: unclear plasma membrane nucleus	TUB2 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT5G20020	Predicted two hybrid	FSW = 0.0267	Class C: unclear nucleus	RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G12250	Predicted interaction prediction two hybrid two hybrid two hybrid Synthetic Rescue interologs mapping Enriched domain pair Co-expression	FSW = 0.2725	Class C: plasma membrane nucleus cytoskeleton	TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G61650	Predicted Phenotypic Suppression Synthetic Rescue	FSW = 0.1498	Class C: plasma membrane cytoskeleton	TUBG1 (GAMMA-TUBULIN) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT1G64740	Predicted Enriched domain pair Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.2557	Class C: plasma membrane cytoskeleton	TUA1 (ALPHA-1 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G14120	Predicted Affinity Capture-MS	FSW = 0.0158	Class C: plasma membrane	DYNAMIN-LIKE PROTEIN 2B (ADL2B)
AT2G20360	Predicted two hybrid	FSW = 0.0367	Class C: plasma membrane	BINDING / CATALYTIC/ COENZYME BINDING
AT3G55360	Predicted Affinity Capture-MS	FSW = 0.0185	Class C: plasma membrane	CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH)
AT5G45970	Predicted Affinity Capture-MS in vivo	FSW = 0.0024	Class C: plasma membrane	ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING
AT1G79920	Predicted Affinity Capture-MS	FSW = 0.0108	Class C: plasma membrane	ATP BINDING
AT5G59840	Predicted Affinity Capture-Western	FSW = 0.0144	Class C: plasma membrane	RAS-RELATED GTP-BINDING FAMILY PROTEIN
AT4G11420	Predicted Reconstituted Complex interaction prediction	FSW = 0.0132	Class C: plasma membrane	EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT5G47100	Predicted Affinity Capture-MS	FSW = 0.0036	Class C: plasma membrane	CBL9 CALCIUM ION BINDING
AT5G19770	Predicted Enriched domain pair Gene fusion method Phylogenetic profile method	FSW = 0.1731	Class C: plasma membrane	TUA3 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G10220	Predicted Affinity Capture-Western in vitro Affinity Capture-MS Synthetic Lethality Affinity Capture-Western two hybrid Phenotypic Suppression interologs mapping interaction prediction	FSW = 0.0713	Class C: nucleus cytoskeleton	TUBULIN FOLDING COFACTOR B
AT5G67270	Predicted two hybrid Synthetic Lethality interologs mapping interaction prediction	FSW = 0.0434	Class C: nucleus cytoskeleton	ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT1G09770	Predicted Synthetic Rescue interologs mapping	FSW = 0.0128	Class C: nucleus	ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR
AT5G67630	Predicted Affinity Capture-MS	FSW = 0.0513	Class C: nucleus	DNA HELICASE PUTATIVE
AT2G31660	Predicted Affinity Capture-MS	FSW = 0.0356	Class C: nucleus	SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) BINDING / PROTEIN TRANSPORTER
AT2G47620	Predicted synthetic growth defect	FSW = 0.0356	Class C: nucleus	ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT1G44900	Predicted interologs mapping	FSW = 0.0034	Class C: nucleus	ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE
AT1G03190	Predicted Affinity Capture-MS	FSW = 0.0183	Class C: nucleus	UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT5G52470	Predicted Affinity Capture-MS	FSW = 0.0087	Class C: nucleus	FIB1 (FIBRILLARIN 1) SNORNA BINDING
AT5G05620	Predicted Affinity Capture-MS in vitro	FSW = 0.0886	Class C: cytoskeleton	GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT5G62500	Predicted Reconstituted Complex interologs mapping	FSW = 0.0400	Class C: cytoskeleton	ATEB1B (END BINDING PROTEIN 1B) MICROTUBULE BINDING
AT2G35630	Predicted two hybrid two hybrid Reconstituted Complex	FSW = 0.0570	Class C: cytoskeleton	MOR1 (MICROTUBULE ORGANIZATION 1) MICROTUBULE BINDING
AT1G50010	Predicted Enriched domain pair Gene fusion method Phylogenetic profile method	FSW = 0.2235	Class C: cytoskeleton	TUA2 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G19780	Predicted Enriched domain pair Gene fusion method Phylogenetic profile method	FSW = 0.1905	Class C: cytoskeleton	TUA5 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G36880	Predicted Affinity Capture-MS	FSW = 0.0166	Unknown	ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE
AT5G03290	Predicted Affinity Capture-MS	FSW = 0.0540	Unknown	ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT2G45300	Predicted Affinity Capture-MS	FSW = 0.0517	Unknown	3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT1G71440	Predicted Affinity Capture-Western in vitro Affinity Capture-MS two hybrid interologs mapping Synthetic Lethality Affinity Capture-Western interaction prediction	FSW = 0.1171	Unknown	PFI (PFIFFERLING)
AT3G04770	Predicted Affinity Capture-MS	FSW = 0.0801	Unknown	RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G10050	Predicted Affinity Capture-MS	FSW = 0.0233	Unknown	OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE
AT3G12050	Predicted Affinity Capture-MS	FSW = 0.0663	Unknown	AHA1 DOMAIN-CONTAINING PROTEIN
AT3G26560	Predicted Synthetic Rescue	FSW = 0.0323	Unknown	ATP-DEPENDENT RNA HELICASE PUTATIVE
AT5G02050	Predicted Affinity Capture-MS	FSW = 0.0045	Unknown	MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT3G07140	Predicted in vivo	FSW = 0.0174	Unknown	GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN
AT3G57650	Predicted two hybrid	FSW = 0.0306	Unknown	LPAT2 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE
AT4G36480	Predicted Affinity Capture-MS	FSW = 0.0435	Unknown	ATLCB1 (LONG-CHAIN BASE1) PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE
AT1G61770	Predicted two hybrid	FSW = 0.0275	Unknown	DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT4G26840	Predicted Affinity Capture-MS	FSW = 0.0174	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT5G63860	Predicted interologs mapping	FSW = 0.0356	Unknown	UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT1G79750	Predicted Affinity Capture-MS	FSW = 0.0718	Unknown	ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR
AT4G28560	Predicted Gene fusion method	FSW = 0.1074	Unknown	RIC7 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 7) PROTEIN BINDING
AT3G20050	Predicted in vivo synthetic growth defect interaction prediction	FSW = 0.0167	Unknown	ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT5G53360	Predicted Affinity Capture-MS two hybrid in vivo in vitro	FSW = 0.0124	Unknown	SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN
AT2G45790	Predicted Affinity Capture-MS	FSW = 0.0753	Unknown	PMM (PHOSPHOMANNOMUTASE) PHOSPHOMANNOMUTASE
AT5G11210	Predicted in vitro in vivo	FSW = 0.0111	Unknown	ATGLR25 INTRACELLULAR LIGAND-GATED ION CHANNEL
AT3G27530	Predicted two hybrid	FSW = 0.0049	Unknown	GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER
AT3G07370	Predicted two hybrid	FSW = 0.0231	Unknown	CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN) UBIQUITIN-PROTEIN LIGASE
AT3G46220	Predicted two hybrid	FSW = 0.0136	Unknown	UNKNOWN PROTEIN
AT4G09150	Predicted two hybrid	FSW = 0.0431	Unknown	T-COMPLEX PROTEIN 11
AT5G19350	Predicted two hybrid	FSW = 0.0092	Unknown	RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE
AT5G49550	Predicted two hybrid	FSW = 0.0111	Unknown	UNKNOWN PROTEIN
AT5G54670	Predicted Phenotypic Enhancement	FSW = 0.0828	Unknown	ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR
AT2G07340	Predicted Reconstituted Complex	FSW = 0.0150	Unknown	PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G21060	Predicted Co-purification	FSW = 0.0122	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G77720	Predicted interologs mapping	FSW = 0.0094	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT2G30410	Predicted Synthetic Lethality interologs mapping interologs mapping interologs mapping Synthetic Lethality	FSW = 0.1538	Unknown	KIS (KIESEL) UNFOLDED PROTEIN BINDING
AT1G08780	Predicted interologs mapping	FSW = 0.0619	Unknown	AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G10580	Predicted Synthetic Rescue Synthetic Rescue	FSW = 0.0196	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G29990	Predicted interologs mapping Synthetic Lethality interaction prediction	FSW = 0.0597	Unknown	PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT2G16950	Predicted Affinity Capture-MS	FSW = 0.0439	Unknown	TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT2G22480	Predicted Affinity Capture-Western	FSW = 0.0317	Unknown	PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE
AT3G02820	Predicted Affinity Capture-MS	FSW = 0.0528	Unknown	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G03110	Predicted Affinity Capture-MS	FSW = 0.0371	Unknown	XPO1B BINDING / PROTEIN TRANSPORTER
AT3G12670	Predicted Affinity Capture-MS	FSW = 0.0179	Unknown	EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC
AT3G22480	Predicted interologs mapping	FSW = 0.0768	Unknown	PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G59950	Predicted interaction prediction two hybrid	FSW = 0.0367	Unknown	AUTOPHAGY 4B (APG4B)
AT3G60860	Predicted Synthetic Lethality Affinity Capture-MS	FSW = 0.0047	Unknown	GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN
AT4G27180	Predicted Reconstituted Complex	FSW = 0.0946	Unknown	ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR
AT5G02880	Predicted Affinity Capture-MS	FSW = 0.0294	Unknown	UPL4 UBIQUITIN-PROTEIN LIGASE
AT5G07760	Predicted interologs mapping	FSW = 0.0281	Unknown	FORMIN HOMOLOGY 2 DOMAIN-CONTAINING PROTEIN / FH2 DOMAIN-CONTAINING PROTEIN
AT5G19820	Predicted Affinity Capture-MS	FSW = 0.0116	Unknown	EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G23290	Predicted interologs mapping	FSW = 0.0828	Unknown	PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G48120	Predicted Affinity Capture-MS	FSW = 0.0593	Unknown	BINDING
AT5G49510	Predicted interologs mapping interologs mapping Phenotypic Enhancement	FSW = 0.0545	Unknown	PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G62600	Predicted Affinity Capture-MS	FSW = 0.0313	Unknown	TRANSPORTIN-SR-RELATED
AT4G22140	Predicted synthetic growth defect	FSW = 0.0083	Unknown	DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT3G58180	Predicted synthetic growth defect	FSW = 0.0061	Unknown	PBS LYASE HEAT-LIKE REPEAT-CONTAINING PROTEIN
AT5G55190	Predicted two hybrid	FSW = 0.0487	Unknown	RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G62700	Predicted Enriched domain pair Gene fusion method	FSW = 0.1564	Unknown	TUB3 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT3G14100	Predicted Gene fusion method	FSW = 0.0094	Unknown	OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT4G14960 - ( TUA6 structural constituent of cytoskeleton )

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