Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G50010 - ( TUA2 structural constituent of cytoskeleton )
14 Proteins interacs with AT1G50010Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G14960 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile method | FSW = 0.2235
| Class C:cytoskeleton | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G12250 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementEnriched domain pair | FSW = 0.0820
| Class C:cytoskeleton | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G64740 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.5192
| Class C:cytoskeleton | TUA1 (ALPHA-1 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G19780 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile method | FSW = 0.7105
| Class C:cytoskeleton | TUA5 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G04820 | PredictedEnriched domain pairGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.1667
| Unknown | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G62690 | PredictedEnriched domain pairGene fusion method | FSW = 0.4706
| Unknown | TUB2 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT5G19770 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile method | FSW = 0.7500
| Unknown | TUA3 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G57650 | Predictedtwo hybrid | FSW = 0.1696
| Unknown | LPAT2 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE |
AT4G28560 | PredictedGene fusion method | FSW = 0.4655
| Unknown | RIC7 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 7) PROTEIN BINDING |
AT1G47500 | Predictedtwo hybridtwo hybrid | FSW = 0.0336
| Unknown | ATRBP47C (RNA-BINDING PROTEIN 47C) RNA BINDING |
AT3G46220 | Predictedtwo hybridtwo hybrid | FSW = 0.0741
| Unknown | UNKNOWN PROTEIN |
AT3G07370 | Predictedtwo hybridtwo hybrid | FSW = 0.0741
| Unknown | CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN) UBIQUITIN-PROTEIN LIGASE |
AT1G51260 | Predictedtwo hybrid | FSW = 0.0933
| Unknown | LPAT3 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE |
AT5G62700 | PredictedEnriched domain pairGene fusion method | FSW = 0.3810
| Unknown | TUB3 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454