Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G47620 - ( ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA binding )
96 Proteins interacs with AT2G47620Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G21700 | Experimentaltwo hybrid | FSW = 0.0215
| Class A:nucleusClass D:nucleus (p = 0.78) | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT2G33610 | Experimentaltwo hybrid | FSW = 0.0746
| Class A:nucleusClass D:nucleus (p = 0.78) | ATSWI3B (SWITCH SUBUNIT 3) DNA BINDING |
AT2G28290 | Experimentalpull down | FSW = 0.0350
| Class A:nucleusClass D:nucleus (p = 0.78) | SYD (SPLAYED) ATPASE/ CHROMATIN BINDING |
AT3G17590 | Experimentaltwo hybrid | FSW = 0.0398
| Class A:nucleus | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT4G16280 | Experimentaltwo hybrid | FSW = 0.0545
| Unknown | FCA RNA BINDING |
AT4G14960 | Predictedsynthetic growth defect | FSW = 0.0356
| Class C:nucleus | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G09200 | PredictedAffinity Capture-MS | FSW = 0.0099
| Class C:nucleus | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
AT5G59690 | PredictedAffinity Capture-MS | FSW = 0.0950
| Class C:nucleus | HISTONE H4 |
AT2G44680 | PredictedPhenotypic Enhancement | FSW = 0.1146
| Class C:nucleus | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT3G60180 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.1562
| Class C:nucleus | URIDYLATE KINASE PUTATIVE / URIDINE MONOPHOSPHATE KINASE PUTATIVE / UMP KINASE PUTATIVE |
AT4G26720 | PredictedPhenotypic Suppression | FSW = 0.0450
| Class C:nucleus | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G12810 | PredictedPhenotypic Enhancement | FSW = 0.0746
| Class C:nucleus | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G54280 | PredictedAffinity Capture-MS | FSW = 0.0911
| Class C:nucleus | RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT4G10710 | PredictedAffinity Capture-MS | FSW = 0.0924
| Class C:nucleus | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT4G10670 | PredictedAffinity Capture-MS | FSW = 0.0679
| Class C:nucleus | GTC2 |
AT1G02740 | PredictedPhenotypic Enhancement | FSW = 0.0723
| Class C:nucleus | CHROMATIN BINDING |
AT2G24490 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0831
| Class C:nucleus | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT5G19310 | Predictedtwo hybridinterologs mappinginteraction prediction | FSW = 0.1015
| Class C:nucleus | HOMEOTIC GENE REGULATOR PUTATIVE |
AT4G02070 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0147
| Class C:nucleus | MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING |
AT3G13445 | PredictedAffinity Capture-MS | FSW = 0.0310
| Class C:nucleus | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT5G35910 | PredictedPhenotypic Enhancement | FSW = 0.0472
| Class C:nucleus | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT2G28740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1682
| Class C:nucleus | HIS4 DNA BINDING |
AT2G13370 | PredictedPhenotypic Enhancement | FSW = 0.1904
| Class C:nucleus | CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G36740 | PredictedPhenotypic Enhancement | FSW = 0.0759
| Class C:nucleus | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G18760 | PredictedPhenotypic Enhancement | FSW = 0.0251
| Class C:nucleus | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G27470 | PredictedPhenotypic Enhancement | FSW = 0.1339
| Class C:nucleus | NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR |
AT5G08630 | PredictedAffinity Capture-MS | FSW = 0.1397
| Class C:nucleus | DDT DOMAIN-CONTAINING PROTEIN |
AT1G55520 | PredictedAffinity Capture-MS | FSW = 0.0373
| Class C:nucleus | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT2G43810 | PredictedPhenotypic Enhancement | FSW = 0.0718
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT3G06010 | Predictedtwo hybrid | FSW = 0.0719
| Class C:nucleus | ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT5G18620 | PredictedAffinity Capture-MS | FSW = 0.1070
| Class C:nucleus | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
AT5G63400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0823
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT1G07660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1718
| Unknown | HISTONE H4 |
AT1G04820 | Predictedsynthetic growth defect | FSW = 0.0179
| Unknown | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G12580 | PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT5G10350 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSCo-crystal StructureAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSCo-crystal StructureCo-purification | FSW = 0.0780
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT5G13710 | PredictedPhenotypic Enhancement | FSW = 0.0080
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT1G16030 | PredictedAffinity Capture-MS | FSW = 0.0264
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT4G38200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1640
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT2G45300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1845
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT5G53480 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0130
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT4G30950 | PredictedAffinity Capture-MS | FSW = 0.1428
| Unknown | FAD6 (FATTY ACID DESATURASE 6) OMEGA-6 FATTY ACID DESATURASE |
AT5G56030 | PredictedAffinity Capture-MS | FSW = 0.0343
| Unknown | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT4G36640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1004
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G52640 | PredictedAffinity Capture-MS | FSW = 0.0449
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G18524 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0397
| Unknown | MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT4G25740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1913
| Unknown | 40S RIBOSOMAL PROTEIN S10 (RPS10A) |
AT4G33090 | PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT1G79930 | PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | HSP91 ATP BINDING |
AT4G28060 | PredictedAffinity Capture-MS | FSW = 0.1558
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 6B PUTATIVE |
AT1G59900 | PredictedPhenotypic Suppression | FSW = 0.0471
| Unknown | AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0286
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT4G16420 | PredictedAffinity Capture-MS | FSW = 0.0759
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT4G26840 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0461
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT5G63860 | PredictedAffinity Capture-MS | FSW = 0.0773
| Unknown | UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT1G02100 | Predictedinterologs mappinginterologs mappinginterologs mappinginterologs mappingtwo hybridCo-crystal StructureCo-crystal Structuretwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridCo-purificationCo-crystal StructureReconstituted Complexinterologs mappingSynthetic LethalityPhenotypic EnhancementSynthetic Rescue | FSW = 0.0855
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G74310 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G33560 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1064
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT2G34750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1102
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT2G34890 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2087
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT1G05910 | PredictedPhenotypic Enhancement | FSW = 0.1207
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
AT1G23260 | PredictedPhenotypic Enhancement | FSW = 0.0419
| Unknown | MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G49540 | PredictedPhenotypic Enhancement | FSW = 0.0373
| Unknown | NUCLEOTIDE BINDING |
AT1G52740 | PredictedPhenotypic Enhancement | FSW = 0.1534
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G59890 | PredictedAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancement | FSW = 0.0828
| Unknown | SNL5 (SIN3-LIKE 5) |
AT2G23070 | PredictedPhenotypic Suppression | FSW = 0.0579
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G34500 | PredictedPhenotypic Suppression | FSW = 0.0316
| Unknown | CYP710A1 (CYTOCHROME P450 FAMILY 710 SUBFAMILY A POLYPEPTIDE 1) C-22 STEROL DESATURASE/ OXYGEN BINDING |
AT2G44150 | PredictedPhenotypic Enhancement | FSW = 0.0633
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G06670 | PredictedPhenotypic Suppression | FSW = 0.0350
| Unknown | BINDING |
AT3G09640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-Western | FSW = 0.0913
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT3G12670 | PredictedSynthetic Rescue | FSW = 0.0325
| Unknown | EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC |
AT3G24030 | PredictedPhenotypic Enhancement | FSW = 0.0516
| Unknown | HYDROXYETHYLTHIAZOLE KINASE FAMILY PROTEIN |
AT3G42660 | PredictedPhenotypic Enhancement | FSW = 0.0650
| Unknown | NUCLEOTIDE BINDING |
AT4G04700 | PredictedReconstituted Complex | FSW = 0.0117
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G22140 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1574
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G22756 | PredictedAffinity Capture-MS | FSW = 0.0471
| Unknown | SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE/ CATALYTIC |
AT5G06620 | PredictedAffinity Capture-MS | FSW = 0.1705
| Unknown | SDG38 (SET DOMAIN PROTEIN 38) |
AT5G10260 | PredictedPhenotypic Enhancement | FSW = 0.0828
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G10400 | PredictedAffinity Capture-MS | FSW = 0.0828
| Unknown | HISTONE H3 |
AT5G10790 | PredictedPhenotypic Enhancement | FSW = 0.0603
| Unknown | UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING |
AT5G24410 | PredictedAffinity Capture-MS | FSW = 0.1036
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED |
AT5G50320 | PredictedPhenotypic Enhancement | FSW = 0.0629
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT5G60040 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0358
| Unknown | NRPC1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING / ZINC ION BINDING |
AT5G61580 | PredictedAffinity Capture-MS | FSW = 0.0926
| Unknown | PFK4 (PHOSPHOFRUCTOKINASE 4) 6-PHOSPHOFRUCTOKINASE |
AT3G22480 | PredictedPhenotypic Enhancement | FSW = 0.0895
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G46320 | PredictedAffinity Capture-MS | FSW = 0.1328
| Unknown | HISTONE H4 |
AT4G15370 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0077
| Unknown | BARS1 (BARUOL SYNTHASE 1) BARUOL SYNTHASE/ CATALYTIC |
AT4G32840 | PredictedAffinity Capture-MS | FSW = 0.1016
| Unknown | PFK6 (PHOSPHOFRUCTOKINASE 6) 6-PHOSPHOFRUCTOKINASE |
AT5G14180 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0692
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G45140 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0460
| Unknown | NRPC2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
AT1G09200 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0689
| Unknown | HISTONE H3 |
AT2G40010 | PredictedAffinity Capture-MS | FSW = 0.0222
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
AT1G10450 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0664
| Unknown | SNL6 (SIN3-LIKE 6) |
AT1G08910 | PredictedAffinity Capture-MS | FSW = 0.0219
| Unknown | EMB3001 (EMBRYO DEFECTIVE 3001) ZINC ION BINDING |
AT1G11660 | PredictedAffinity Capture-MS | FSW = 0.0218
| Unknown | HEAT SHOCK PROTEIN PUTATIVE |
AT1G24190 | Predictedinteraction prediction | FSW = 0.0138
| Unknown | SNL3 (SIN3-LIKE 3) TRANSCRIPTION REPRESSOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454