Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G23260 - ( MMZ1 (MMS ZWEI HOMOLOGUE 1) protein binding / ubiquitin-protein ligase )
37 Proteins interacs with AT1G23260Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G16890 | Experimentaltwo hybrid | FSW = 0.2058
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT1G78870 | Experimentalpull downtwo hybridReconstituted Complexin vitro | FSW = 0.2612
| Unknown | UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
ETG7334 | Experimentaltwo hybrid | FSW = 0.0454
| Unknown | UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
YDR092W | Experimentaltwo hybrid | FSW = 0.0454
| Unknown | UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G45130 | PredictedPhenotypic Enhancement | FSW = 0.0250
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT5G43530 | PredictedPhenotypic Enhancement | FSW = 0.2502
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT3G11630 | PredictedPhenotypic Enhancement | FSW = 0.0369
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT2G45300 | PredictedPhenotypic Suppression | FSW = 0.0480
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT5G67270 | PredictedPhenotypic Enhancement | FSW = 0.0570
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT2G24490 | PredictedPhenotypic Enhancement | FSW = 0.0436
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT1G75230 | PredictedPhenotypic Enhancement | FSW = 0.1037
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
AT2G47620 | PredictedPhenotypic Enhancement | FSW = 0.0419
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT5G22750 | PredictedPhenotypic EnhancementEnriched domain pairCo-expression | FSW = 0.1764
| Unknown | RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT1G07370 | PredictedPhenotypic Enhancementinterologs mapping | FSW = 0.1326
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT1G01040 | PredictedPhenotypic Enhancement | FSW = 0.1210
| Unknown | DCL1 (DICER-LIKE 1) ATP-DEPENDENT HELICASE/ DOUBLE-STRANDED RNA BINDING / PROTEIN BINDING / RIBONUCLEASE III |
AT5G41150 | PredictedPhenotypic Enhancement | FSW = 0.0958
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
AT2G42120 | PredictedSynthetic Rescuesynthetic growth defect | FSW = 0.0442
| Unknown | POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT1G17145 | PredictedAffinity Capture-MS | FSW = 0.0627
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G07270 | PredictedSynthetic Lethality | FSW = 0.0234
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT1G29990 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0591
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G49980 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.2533
| Unknown | DNA-DIRECTED DNA POLYMERASE/ DAMAGED DNA BINDING |
AT1G55300 | PredictedPhenotypic Suppression | FSW = 0.0234
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G55915 | PredictedPhenotypic Enhancement | FSW = 0.3186
| Unknown | ZINC ION BINDING |
AT1G67500 | PredictedSynthetic RescuePhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defect | FSW = 0.1829
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT3G18860 | Predictedsynthetic growth defect | FSW = 0.0920
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22480 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0445
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G42660 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1603
| Unknown | NUCLEOTIDE BINDING |
AT5G10260 | PredictedPhenotypic Enhancement | FSW = 0.0528
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G23290 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0902
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G49510 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0784
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G51940 | PredictedPhenotypic Enhancement | FSW = 0.0187
| Unknown | NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G29150 | PredictedPhenotypic Enhancement | FSW = 0.0663
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT4G25120 | PredictedSynthetic Rescue | FSW = 0.1877
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT5G44740 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0898
| Unknown | POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE |
AT1G70660 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2182
| Unknown | MMZ2 (MMS ZWEI HOMOLOGE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G36060 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0968
| Unknown | UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN |
AT3G52560 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1265
| Unknown | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454