Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G45130 - ( RHA1 (RAB HOMOLOG 1) GTP binding )
87 Proteins interacs with AT5G45130Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G27600 | Experimentalconfocal microscopyelectron microscopy | FSW = 0.0313
| Unknown | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G19640 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4065
| Class C:vacuoleendoplasmic reticulum | ARA7 GTP BINDING |
AT5G09590 | PredictedSynthetic Lethality | FSW = 0.0089
| Class C:vacuole | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT5G41790 | Predictedtwo hybridin vivoin vivotwo hybrid | FSW = 0.0269
| Class C:vacuole | CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING |
AT1G49300 | PredictedPhylogenetic profile method | FSW = 0.2402
| Class C:vacuole | RABG3E (RAB GTPASE HOMOLOG G3E) GTP BINDING |
AT2G44610 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2347
| Class C:vacuole | RAB6A GTP BINDING / PROTEIN BINDING |
AT3G46060 | PredictedPhylogenetic profile method | FSW = 0.1116
| Class C:vacuole | ATRAB8A GTP BINDING |
AT1G31780 | PredictedPhenotypic Enhancement | FSW = 0.0963
| Class C:vacuole | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT1G55190 | Predictedtwo hybrid | FSW = 0.0928
| Class C:vacuole | PRA7 |
AT1G22740 | PredictedPhylogenetic profile method | FSW = 0.2145
| Class C:vacuole | RABG3B GTP BINDING |
AT1G79590 | Predictedtwo hybrid | FSW = 0.1174
| Class C:vacuole | SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR |
AT5G55400 | PredictedSynthetic Lethality | FSW = 0.0116
| Class C:vacuole | FIMBRIN-LIKE PROTEIN PUTATIVE |
AT2G30710 | Predictedbiochemical | FSW = 0.1295
| Class C:vacuole | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT2G38020 | PredictedPhenotypic Enhancement | FSW = 0.1528
| Class C:vacuole | VCL1 (VACUOLELESS 1) |
AT2G21880 | PredictedPhylogenetic profile method | FSW = 0.2299
| Class C:vacuole | ATRAB7A GTP BINDING |
AT5G23630 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1349
| Class C:endoplasmic reticulum | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G07670 | PredictedPhenotypic Enhancement | FSW = 0.0879
| Class C:endoplasmic reticulum | CALCIUM-TRANSPORTING ATPASE |
AT5G04990 | PredictedAffinity Capture-MS | FSW = 0.0056
| Class C:endoplasmic reticulum | SAD1/UNC-84 PROTEIN-RELATED |
AT3G54840 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1300
| Class C:endoplasmic reticulum | ARA6 GTP BINDING / GTPASE |
AT3G59500 | Predictedtwo hybrid | FSW = 0.1152
| Class C:endoplasmic reticulum | INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN |
AT1G65540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0464
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT3G08530 | Predictedsynthetic growth defect | FSW = 0.0084
| Unknown | CLATHRIN HEAVY CHAIN PUTATIVE |
AT5G63110 | PredictedPhenotypic Enhancement | FSW = 0.0414
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT3G16100 | PredictedPhylogenetic profile method | FSW = 0.3826
| Unknown | ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP BINDING |
AT3G18820 | PredictedPhylogenetic profile method | FSW = 0.2823
| Unknown | ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F) GTP BINDING |
AT5G08080 | PredictedAffinity Capture-MSin vivoin vitro | FSW = 0.0147
| Unknown | SYP132 (SYNTAXIN OF PLANTS 132) SNAP RECEPTOR |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0342
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G43130 | PredictedPhylogenetic profile method | FSW = 0.1798
| Unknown | ARA4 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT5G59840 | PredictedPhylogenetic profile method | FSW = 0.1087
| Unknown | RAS-RELATED GTP-BINDING FAMILY PROTEIN |
AT2G26300 | Predictedtwo hybrid | FSW = 0.0124
| Unknown | GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) GTP BINDING / GTPASE/ CHANNEL REGULATOR/ SIGNAL TRANSDUCER |
AT1G73640 | PredictedPhylogenetic profile method | FSW = 0.0556
| Unknown | ATRABA6A (ARABIDOPSIS RAB GTPASE HOMOLOG A6A) GTP BINDING |
AT1G01200 | PredictedPhylogenetic profile method | FSW = 0.1029
| Unknown | ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3) GTP BINDING |
AT3G57660 | PredictedPhenotypic Enhancement | FSW = 0.0088
| Unknown | NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING |
AT2G03870 | PredictedPhenotypic Suppression | FSW = 0.0175
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT3G13940 | PredictedPhenotypic Enhancement | FSW = 0.0149
| Unknown | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G34390 | Predictedtwo hybrid | FSW = 0.0057
| Unknown | XLG2 (EXTRA-LARGE GTP-BINDING PROTEIN 2) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
AT2G06210 | PredictedPhenotypic Enhancement | FSW = 0.0275
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT2G22290 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1761
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT5G64990 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1969
| Unknown | ATRABH1A (ARABIDOPSIS RAB GTPASE HOMOLOG H1A) GTP BINDING |
AT5G03520 | PredictedPhylogenetic profile method | FSW = 0.2076
| Unknown | ATRAB8C GTP BINDING |
AT5G18280 | PredictedPhenotypic Enhancement | FSW = 0.1137
| Unknown | ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) ATPASE/ NUCLEOTIDE DIPHOSPHATASE |
AT4G33730 | Predictedinterologs mapping | FSW = 0.0044
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G06540 | PredictedAffinity Capture-MSin vitroin vitroAffinity Capture-MS | FSW = 0.0897
| Unknown | GDP DISSOCIATION INHIBITOR FAMILY PROTEIN / RAB GTPASE ACTIVATOR FAMILY PROTEIN |
AT5G19910 | PredictedPhenotypic Enhancement | FSW = 0.0697
| Unknown | SOH1 FAMILY PROTEIN |
AT1G77140 | PredictedPhenotypic Enhancement | FSW = 0.0567
| Unknown | VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER |
AT2G05170 | PredictedPhenotypic Enhancement | FSW = 0.0614
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT2G42120 | PredictedPhenotypic Suppression | FSW = 0.0056
| Unknown | POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT5G09230 | Predictedtwo hybridtwo hybrid | FSW = 0.0393
| Unknown | SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING |
AT1G60070 | Predictedtwo hybrid | FSW = 0.0198
| Unknown | BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT5G07110 | PredictedAffinity Capture-MStwo hybridin vitro | FSW = 0.0729
| Unknown | PRA1B6 (PRENYLATED RAB ACCEPTOR 1B6) |
AT4G22720 | PredictedAffinity Capture-MS | FSW = 0.0440
| Unknown | GLYCOPROTEASE M22 FAMILY PROTEIN |
AT5G09550 | Predictedin vitroAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-WesternEnriched domain pairCo-expression | FSW = 0.1192
| Unknown | RAB GDP-DISSOCIATION INHIBITOR |
AT1G08190 | PredictedSynthetic Lethality | FSW = 0.1321
| Unknown | VACUOLAR ASSEMBLY PROTEIN PUTATIVE (VPS41) |
AT1G20575 | PredictedPhenotypic Enhancement | FSW = 0.0516
| Unknown | DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE |
AT1G23260 | PredictedPhenotypic Enhancement | FSW = 0.0250
| Unknown | MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G26450 | PredictedPhenotypic Enhancement | FSW = 0.1172
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G59890 | PredictedPhenotypic Enhancement | FSW = 0.0801
| Unknown | SNL5 (SIN3-LIKE 5) |
AT1G78580 | PredictedAffinity Capture-MS | FSW = 0.0211
| Unknown | ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE) ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G79730 | PredictedPhenotypic Enhancement | FSW = 0.0769
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT2G02760 | PredictedPhenotypic Enhancement | FSW = 0.0590
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G28390 | PredictedPhenotypic Enhancement | FSW = 0.1371
| Unknown | SAND FAMILY PROTEIN |
AT2G36300 | PredictedSynthetic Lethalitytwo hybridSynthetic Lethality | FSW = 0.0929
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT3G19770 | PredictedAffinity Capture-Westernbiochemicaltwo hybrid | FSW = 0.0464
| Unknown | VPS9A RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT3G20800 | PredictedPhenotypic Enhancement | FSW = 0.0668
| Unknown | RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE |
AT3G22590 | PredictedSynthetic LethalityPhenotypic EnhancementSynthetic Lethality | FSW = 0.1023
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G54380 | PredictedPhenotypic Enhancement | FSW = 0.0466
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT4G05330 | PredictedPhenotypic Enhancement | FSW = 0.0512
| Unknown | AGD13 (ARF-GAP DOMAIN 13) ARF GTPASE ACTIVATOR/ ZINC ION BINDING |
AT4G38630 | PredictedPhenotypic Suppression | FSW = 0.0401
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G13680 | PredictedPhenotypic Enhancement | FSW = 0.0404
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT5G23290 | PredictedPhenotypic Suppression | FSW = 0.0337
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G27970 | PredictedPhenotypic SuppressionSynthetic Lethality | FSW = 0.1046
| Unknown | BINDING |
AT5G42000 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1280
| Unknown | ORMDL FAMILY PROTEIN |
AT1G12470 | PredictedPhenotypic Enhancement | FSW = 0.1287
| Unknown | PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN |
AT1G32130 | PredictedPhenotypic Enhancement | FSW = 0.0199
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK) |
AT1G57600 | PredictedPhenotypic Enhancement | FSW = 0.1011
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT1G69640 | PredictedPhenotypic Enhancement | FSW = 0.0543
| Unknown | SBH1 (SPHINGOID BASE HYDROXYLASE 1) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT1G79990 | PredictedPhenotypic Enhancement | FSW = 0.0170
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT2G22530 | PredictedPhenotypic Enhancement | FSW = 0.0815
| Unknown | CATALYTIC/ TRANSFERASE |
AT3G12490 | PredictedAffinity Capture-MS | FSW = 0.0365
| Unknown | CYSTEINE PROTEASE INHIBITOR PUTATIVE / CYSTATIN PUTATIVE |
AT3G17630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0430
| Unknown | ATCHX19 (CATION/H+ EXCHANGER 19) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT3G47120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0260
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G10260 | PredictedSynthetic LethalityGene neighbors methodPhylogenetic profile method | FSW = 0.2189
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G45600 | PredictedPhenotypic Suppression | FSW = 0.0470
| Unknown | GAS41 PROTEIN BINDING |
AT5G55090 | PredictedAffinity Capture-MS | FSW = 0.0358
| Unknown | MAPKKK15 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G08770 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0696
| Unknown | PRA1E (PRENYLATED RAB ACCEPTOR 1E) |
AT2G31680 | PredictedPhylogenetic profile method | FSW = 0.1538
| Unknown | ATRABA5D (ARABIDOPSIS RAB GTPASE HOMOLOG A5D) GTP BINDING |
AT4G39890 | PredictedPhylogenetic profile method | FSW = 0.1440
| Unknown | ATRABH1C (ARABIDOPSIS RAB GTPASE HOMOLOG H1C) GTP BINDING / PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454