Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G55400 - ( fimbrin-like protein putative )
30 Proteins interacs with AT5G55400Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G47520 | PredictedAffinity Capture-MS | FSW = 0.0141
| Class C:vacuole | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G45130 | PredictedSynthetic Lethality | FSW = 0.0116
| Class C:vacuole | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT2G06510 | PredictedAffinity Capture-MS | FSW = 0.0581
| Unknown | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT4G35460 | PredictedAffinity Capture-MS | FSW = 0.0814
| Unknown | NTRB (NADPH-DEPENDENT THIOREDOXIN REDUCTASE B) THIOREDOXIN-DISULFIDE REDUCTASE |
AT3G12110 | Predictedsynthetic growth defectsynthetic growth defectSynthetic RescueSynthetic RescueSynthetic RescueSynthetic RescueSynthetic RescueSynthetic Rescuesynthetic growth defectAffinity Capture-WesternReconstituted ComplexAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexSynthetic LethalityAffinity Capture-MSCo-purificationPhenotypic Suppression | FSW = 0.0476
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G65040 | PredictedAffinity Capture-MS | FSW = 0.0193
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G08720 | PredictedAffinity Capture-MS | FSW = 0.0646
| Unknown | S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE |
AT3G13920 | PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT3G05520 | PredictedSynthetic Lethality | FSW = 0.1612
| Unknown | F-ACTIN CAPPING PROTEIN ALPHA SUBUNIT FAMILY PROTEIN |
AT2G44950 | Predictedsynthetic growth defect | FSW = 0.0144
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT4G26700 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0595
| Unknown | ATFIM1 ACTIN BINDING |
AT2G31200 | PredictedSynthetic Lethality | FSW = 0.1075
| Unknown | ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) ACTIN BINDING |
AT5G41150 | PredictedAffinity Capture-MS | FSW = 0.0339
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
AT2G31300 | PredictedSynthetic Lethality | FSW = 0.0794
| Unknown | ARPC1B (ACTIN-RELATED PROTEIN C1B) ACTIN BINDING / NUCLEOTIDE BINDING |
AT5G38470 | PredictedAffinity Capture-MS | FSW = 0.0397
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT1G71790 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0748
| Unknown | F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN |
AT4G18010 | PredictedSynthetic Rescue | FSW = 0.1176
| Unknown | AT5PTASE2 (MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2) INOSITOL-POLYPHOSPHATE 5-PHOSPHATASE |
AT1G50030 | Predictedco-fractionationCo-fractionation | FSW = 0.0514
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
AT1G73570 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0751
| Unknown | SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED |
AT2G02760 | PredictedSynthetic Lethality | FSW = 0.0326
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G32850 | PredictedPhenotypic Enhancement | FSW = 0.0300
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G37550 | Predictedsynthetic growth defect | FSW = 0.0305
| Unknown | AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT3G18060 | Predictedsynthetic growth defect | FSW = 0.1769
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G25230 | PredictedAffinity Capture-MS | FSW = 0.0208
| Unknown | ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G27000 | PredictedSynthetic Lethality | FSW = 0.0571
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G03430 | PredictedAffinity Capture-MS | FSW = 0.0171
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT4G15930 | PredictedPhenotypic Enhancement | FSW = 0.0141
| Unknown | MICROTUBULE MOTOR |
AT4G25120 | PredictedAffinity Capture-MS | FSW = 0.0210
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT4G34570 | PredictedPhenotypic Enhancement | FSW = 0.0373
| Unknown | THY-2 (THYMIDYLATE SYNTHASE 2) DIHYDROFOLATE REDUCTASE/ THYMIDYLATE SYNTHASE |
AT5G53770 | PredictedSynthetic Lethality | FSW = 0.0053
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454