Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G05520 - ( F-actin capping protein alpha subunit family protein )
24 Proteins interacs with AT3G05520Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G11964 | PredictedAffinity Capture-MS | FSW = 0.0053
| Class C:nucleus | RNA BINDING |
AT1G03280 | PredictedAffinity Capture-MS | FSW = 0.0174
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN |
AT5G55400 | PredictedSynthetic Lethality | FSW = 0.1612
| Unknown | FIMBRIN-LIKE PROTEIN PUTATIVE |
AT3G12110 | PredictedAffinity Capture-MS | FSW = 0.0954
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0158
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G20090 | PredictedSynthetic Lethality | FSW = 0.0483
| Unknown | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
AT4G35020 | PredictedSynthetic Lethality | FSW = 0.0279
| Unknown | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
AT3G43810 | PredictedAffinity Capture-MS | FSW = 0.0345
| Unknown | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G10900 | PredictedSynthetic Lethality | FSW = 0.0788
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT2G04750 | PredictedSynthetic Lethality | FSW = 0.0926
| Unknown | FIMBRIN-LIKE PROTEIN PUTATIVE |
AT4G26700 | Predictedsynthetic growth defectColocalization | FSW = 0.1634
| Unknown | ATFIM1 ACTIN BINDING |
AT2G31200 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1276
| Unknown | ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) ACTIN BINDING |
AT3G28730 | PredictedAffinity Capture-MS | FSW = 0.0067
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT1G71790 | Predictedinteraction predictiontwo hybridtwo hybridPhenotypic EnhancementAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-WesternColocalizationEnriched domain pairCo-expression | FSW = 0.3202
| Unknown | F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN |
AT4G37680 | Predictedtwo hybridtwo hybrid | FSW = 0.0169
| Unknown | HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR |
AT5G20270 | Predictedtwo hybrid | FSW = 0.0750
| Unknown | HHP1 (HEPTAHELICAL TRANSMEMBRANE PROTEIN1) RECEPTOR |
AT1G51710 | PredictedAffinity Capture-MS | FSW = 0.0108
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT2G07690 | PredictedAffinity Capture-MS | FSW = 0.0709
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT3G09920 | PredictedSynthetic Lethality | FSW = 0.0817
| Unknown | PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE) 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE |
AT3G18060 | Predictedsynthetic growth defect | FSW = 0.2111
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G18905 | PredictedAffinity Capture-MS | FSW = 0.0758
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G05670 | PredictedAffinity Capture-MS | FSW = 0.0803
| Unknown | PHD FINGER FAMILY PROTEIN |
AT4G18900 | PredictedAffinity Capture-MS | FSW = 0.0367
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G35700 | Predictedinteraction prediction | FSW = 0.1858
| Unknown | FIM2 (FIMBRIN-LIKE PROTEIN 2) ACTIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454