Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G50030 - ( TOR (TARGET OF RAPAMYCIN) 1-phosphatidylinositol-3-kinase/ protein binding )
48 Proteins interacs with AT1G50030Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G20240 | Experimentalpull down | FSW = 0.0241
| Unknown | PI (PISTILLATA) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G08850 | ExperimentalcoimmunoprecipitationAffinity Capture-Western | FSW = 0.1000
| Unknown | RAPTOR1 NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G30860 | Predictedtwo hybridinteraction prediction | FSW = 0.0131
| Unknown | ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) COPPER ION BINDING / GLUTATHIONE BINDING / GLUTATHIONE PEROXIDASE/ GLUTATHIONE TRANSFERASE |
AT3G18140 | Predictedinteraction predictionAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternCo-purification | FSW = 0.1384
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G55400 | Predictedco-fractionationCo-fractionation | FSW = 0.0514
| Unknown | FIMBRIN-LIKE PROTEIN PUTATIVE |
AT3G19980 | PredictedCo-purification | FSW = 0.0217
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G63840 | PredictedSynthetic Rescueinteraction prediction | FSW = 0.0394
| Unknown | RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT3G03800 | Predictedco-fractionationCo-fractionation | FSW = 0.0277
| Unknown | SYP131 (SYNTAXIN OF PLANTS 131) SNAP RECEPTOR |
AT3G25800 | Predictedco-fractionationCo-fractionation | FSW = 0.0117
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT5G23270 | Predictedco-fractionationCo-fractionation | FSW = 0.0210
| Unknown | STP11 (SUGAR TRANSPORTER 11) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G10900 | Predictedinterologs mappinginterologs mapping | FSW = 0.0256
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT3G08720 | PredictedPhenotypic SuppressionPhenotypic Suppressionco-fractionationCo-fractionation | FSW = 0.0431
| Unknown | S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE |
AT1G67490 | PredictedSynthetic Rescue | FSW = 0.0514
| Unknown | GCS1 (GLUCOSIDASE 1) ALPHA-GLUCOSIDASE |
AT3G08730 | PredictedPhenotypic Suppression | FSW = 0.0240
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G02530 | Predictedinterologs mappinginterologs mapping | FSW = 0.0745
| Unknown | CHAPERONIN PUTATIVE |
AT3G19420 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0281
| Unknown | ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT5G39400 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0210
| Unknown | PTEN1 PHOSPHATASE |
AT2G17190 | Predictedin vitroin vivotwo hybrid | FSW = 0.0083
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT2G17200 | Predictedin vitroin vivotwo hybrid | FSW = 0.0157
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT5G01770 | PredictedAffinity Capture-WesternAffinity Capture-Westernin vitroin vivoAffinity Capture-MS | FSW = 0.0061
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G20990 | Predictedin vivoin vitrotwo hybrid | FSW = 0.0200
| Unknown | B73 MOLYBDENUM ION BINDING |
AT1G04160 | Predictedco-fractionationCo-fractionation | FSW = 0.0257
| Unknown | XIB (MYOSIN XI B) MOTOR |
AT1G26450 | PredictedSynthetic Rescueco-fractionationCo-fractionation | FSW = 0.0254
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G08840 | PredictedSynthetic Rescue | FSW = 0.0078
| Unknown | EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING |
AT1G64520 | PredictedAffinity Capture-MS | FSW = 0.0049
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT2G39840 | Predictedtwo hybrid | FSW = 0.0340
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G56640 | PredictedSynthetic Lethality | FSW = 0.0149
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT5G53000 | PredictedbiochemicalCo-purification | FSW = 0.0805
| Unknown | TAP46 (2A PHOSPHATASE ASSOCIATED PROTEIN OF 46 KD) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT5G54620 | Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0982
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT5G58690 | Predictedtwo hybridAffinity Capture-Westerninterologs mappinginteraction prediction | FSW = 0.0216
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT2G13680 | PredictedSynthetic Rescueco-fractionationCo-fractionation | FSW = 0.0337
| Unknown | CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE |
AT3G02460 | Predictedco-fractionationCo-fractionation | FSW = 0.0200
| Unknown | PLANT ADHESION MOLECULE PUTATIVE |
AT3G03960 | Predictedco-fractionationCo-fractionation | FSW = 0.0748
| Unknown | CHAPERONIN PUTATIVE |
AT3G09920 | Predictedinterologs mapping | FSW = 0.0266
| Unknown | PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE) 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE |
AT3G19940 | Predictedco-fractionationCo-fractionation | FSW = 0.0096
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G25230 | Predictedtwo hybridinteraction prediction | FSW = 0.0349
| Unknown | ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT4G08500 | Predictedinterologs mapping | FSW = 0.0755
| Unknown | MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING |
AT4G18010 | PredictedSynthetic Rescue | FSW = 0.0392
| Unknown | AT5PTASE2 (MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2) INOSITOL-POLYPHOSPHATE 5-PHOSPHATASE |
AT4G34490 | Predictedco-fractionationCo-fractionation | FSW = 0.0087
| Unknown | ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) ACTIN BINDING |
AT5G01180 | Predictedco-fractionationCo-fractionation | FSW = 0.0108
| Unknown | PTR5 (PEPTIDE TRANSPORTER 5) DIPEPTIDE TRANSPORTER/ TRANSPORTER |
AT5G40440 | Predictedinterologs mapping | FSW = 0.0301
| Unknown | ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3) MAP KINASE KINASE |
AT2G23070 | PredictedAffinity Capture-MS | FSW = 0.0062
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G22040 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.0574
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G14480 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Western | FSW = 0.1342
| Unknown | PROTEIN BINDING |
AT2G40116 | Predictedinterologs mappingAffinity Capture-Westerninterologs mappingtwo hybrid | FSW = 0.0196
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT1G05470 | PredictedSynthetic Rescue | FSW = 0.0314
| Unknown | CVP2 (COTYLEDON VASCULAR PATTERN 2) HYDROLASE/ INOSITOL TRISPHOSPHATE PHOSPHATASE |
AT1G09460 | PredictedSynthetic Rescue | FSW = 0.0115
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
AT2G29400 | Predictedtwo hybrid | FSW = 0.0165
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454