Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G34490 - ( ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) actin binding )
33 Proteins interacs with AT4G34490Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G49240 | Predictedtwo hybridReconstituted ComplexAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.0897
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G10350 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0084
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT4G30580 | PredictedAffinity Capture-MS | FSW = 0.0261
| Unknown | ATS2 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE/ ACYLTRANSFERASE |
AT3G12110 | Predictedinteraction predictiontwo hybridAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexAffinity Capture-MSReconstituted ComplexAffinity Capture-Westerninterologs mapping | FSW = 0.0763
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G29410 | Predictedtwo hybrid | FSW = 0.0635
| Unknown | 60S RIBOSOMAL PROTEIN L28 (RPL28C) |
AT5G12370 | PredictedAffinity Capture-MS | FSW = 0.0207
| Unknown | SEC10 (EXOCYST COMPLEX COMPONENT SEC10) |
AT2G17440 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complextwo hybrid | FSW = 0.0561
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT2G19760 | Predictedinterologs mappingtwo hybrid | FSW = 0.0602
| Unknown | PRF1 (PROFILIN 1) ACTIN BINDING |
AT3G53750 | Predictedtwo hybrid | FSW = 0.1333
| Unknown | ACT3 (ACTIN 3) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G13445 | PredictedAffinity Capture-MS | FSW = 0.0035
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT2G26660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0936
| Unknown | SPX2 (SPX DOMAIN GENE 2) |
AT5G44200 | PredictedSynthetic Lethality | FSW = 0.0095
| Unknown | CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING |
AT1G55520 | PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT2G31200 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1783
| Unknown | ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) ACTIN BINDING |
AT2G19770 | Predictedinteraction predictioninterologs mappingAffinity Capture-Westerntwo hybridSynthetic Rescue | FSW = 0.0855
| Unknown | PRF5 (PROFILIN5) ACTIN BINDING / ACTIN MONOMER BINDING |
AT3G19670 | PredictedAffinity Capture-MS | FSW = 0.0103
| Unknown | PROTEIN BINDING |
AT5G59890 | PredictedAffinity Capture-MSin vivo | FSW = 0.0407
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
AT3G18060 | Predictedinteraction predictiontwo hybrid | FSW = 0.1221
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G26500 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridAffinity Capture-WesternReconstituted Complexinterologs mappinginteraction prediction | FSW = 0.0641
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT3G56120 | Predictedtwo hybridinteraction prediction | FSW = 0.0317
| Unknown | MET-10+ LIKE FAMILY PROTEIN |
AT1G50030 | Predictedco-fractionationCo-fractionation | FSW = 0.0087
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
AT3G05090 | PredictedAffinity Capture-MS | FSW = 0.0222
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G12740 | PredictedSynthetic Lethality | FSW = 0.0512
| Unknown | ALIS1 (ALA-INTERACTING SUBUNIT 1) PHOSPHOLIPID TRANSPORTER |
AT4G25120 | PredictedSynthetic Lethality | FSW = 0.0034
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT5G07760 | Predictedinterologs mapping | FSW = 0.0732
| Unknown | FORMIN HOMOLOGY 2 DOMAIN-CONTAINING PROTEIN / FH2 DOMAIN-CONTAINING PROTEIN |
AT5G16750 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0052
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G51120 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0360
| Unknown | PABN1 (POLYADENYLATE-BINDING PROTEIN 1) RNA BINDING / POLY(A) BINDING / PROTEIN BINDING |
AT5G55090 | PredictedPhenotypic Suppression | FSW = 0.0165
| Unknown | MAPKKK15 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G01750 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1884
| Unknown | ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) ACTIN BINDING |
AT5G10660 | Predictedinteraction predictiontwo hybridReconstituted ComplexProtein-peptideAffinity Capture-Westernco-fractionationCo-fractionationinterologs mappingProtein-peptideReconstituted Complextwo hybridinteraction prediction | FSW = 0.1115
| Unknown | CALMODULIN-BINDING PROTEIN-RELATED |
AT1G16360 | PredictedSynthetic Lethality | FSW = 0.0347
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT2G01330 | Predictedtwo hybrid | FSW = 0.2137
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G15930 | Predictedinteraction prediction | FSW = 0.0060
| Unknown | MICROTUBULE MOTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454