Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G17440 - ( leucine-rich repeat family protein )
25 Proteins interacs with AT2G17440Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G49240 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0403
| Class C:plasma membrane | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G22710 | PredictedGene fusion method | FSW = 0.2069
| Class C:plasma membrane | CYP706A2 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT5G60670 | Predictedtwo hybridtwo hybrid | FSW = 0.0381
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L12 (RPL12C) |
AT5G26340 | PredictedGene fusion method | FSW = 0.0169
| Class C:plasma membrane | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G20660 | PredictedGene fusion method | FSW = 0.2667
| Unknown | ATOCT4 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G55860 | PredictedSynthetic Rescue | FSW = 0.0365
| Unknown | UPL1 (UBIQUITIN-PROTEIN LIGASE 1) UBIQUITIN-PROTEIN LIGASE |
AT3G10920 | PredictedSynthetic Lethality | FSW = 0.0055
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0175
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT3G23580 | PredictedAffinity Capture-MS | FSW = 0.0711
| Unknown | RNR2A (RIBONUCLEOTIDE REDUCTASE 2A) RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT5G03905 | Predictedtwo hybridtwo hybrid | FSW = 0.0282
| Unknown | HESB-LIKE DOMAIN-CONTAINING PROTEIN |
AT4G34490 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complextwo hybrid | FSW = 0.0561
| Unknown | ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) ACTIN BINDING |
AT3G13640 | PredictedAffinity Capture-MS | FSW = 0.0204
| Unknown | ATRLI1 TRANSPORTER |
AT1G29990 | PredictedAffinity Capture-MS | FSW = 0.0036
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G29550 | PredictedAffinity Capture-MS | FSW = 0.0318
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE |
AT1G01750 | PredictedAffinity Capture-MS | FSW = 0.0610
| Unknown | ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) ACTIN BINDING |
AT3G16840 | PredictedAffinity Capture-MS | FSW = 0.0056
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT2G28820 | PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT4G11260 | PredictedAffinity Capture-WesternSynthetic Rescue | FSW = 0.0301
| Unknown | SGT1B PROTEIN BINDING |
AT2G41860 | Predictedin vitrotwo hybrid | FSW = 0.0168
| Unknown | CPK14 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G58680 | Predictedin vitroin vivotwo hybrid | FSW = 0.0298
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN |
AT1G15780 | PredictedSynthetic Rescue | FSW = 0.0180
| Unknown | UNKNOWN PROTEIN |
AT1G02080 | Predictedtwo hybrid | FSW = 0.0112
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
AT5G02170 | PredictedGene fusion method | FSW = 0.0952
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT3G20950 | PredictedGene fusion method | FSW = 0.1773
| Unknown | CYP705A32 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT2G20780 | PredictedGene fusion method | FSW = 0.0762
| Unknown | MANNITOL TRANSPORTER PUTATIVE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454