Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G26660 - ( SPX2 (SPX DOMAIN GENE 2) )

13 Proteins interacs with AT2G26660
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G57000

Predicted

Affinity Capture-MS

FSW = 0.0250

Class C:

nucleus

NUCLEOLAR ESSENTIAL PROTEIN-RELATED
AT2G21410

Predicted

Affinity Capture-Western

FSW = 0.0756

Unknown

VHA-A2 (VACUOLAR PROTON ATPASE A2) ATPASE
AT2G45130

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1481

Unknown

SPX3 (SPX DOMAIN GENE 3)
AT1G62020

Predicted

Affinity Capture-MS

FSW = 0.0238

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE
AT2G31200

Predicted

Affinity Capture-MS

FSW = 0.0790

Unknown

ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) ACTIN BINDING
AT2G44740

Predicted

Affinity Capture-Western

Affinity Capture-Western

two hybrid

FSW = 0.0585

Unknown

CYCP41 (CYCLIN P41) CYCLIN-DEPENDENT PROTEIN KINASE
AT3G26500

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0912

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN
AT5G26110

Predicted

Affinity Capture-MS

FSW = 0.0250

Unknown

ATP BINDING / CATALYTIC/ PROTEIN KINASE
AT5G58690

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0323

Unknown

PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
AT3G13235

Predicted

two hybrid

FSW = 0.0625

Unknown

UBIQUITIN FAMILY PROTEIN
AT4G34490

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0936

Unknown

ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) ACTIN BINDING
AT3G04080

Predicted

interologs mapping

FSW = 0.0706

Unknown

ATAPY1 (APYRASE 1) ATPASE/ CALMODULIN BINDING / NUCLEOTIDE DIPHOSPHATASE
AT1G57600

Predicted

two hybrid

interaction prediction

FSW = 0.0539

Unknown

MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454