Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G58690 - ( phosphoinositide-specific phospholipase C family protein )
28 Proteins interacs with AT5G58690Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G05630 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0808
| Unknown | PLDP2 PHOSPHOLIPASE D |
AT2G42590 | PredictedPhenotypic Enhancementtwo hybridAffinity Capture-Western | FSW = 0.0141
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G45970 | Predictedin vivoin vitro | FSW = 0.1137
| Unknown | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
AT2G26660 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0323
| Unknown | SPX2 (SPX DOMAIN GENE 2) |
AT3G18130 | Predictedin vivoin vitro | FSW = 0.0139
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT4G34390 | PredictedAffinity Capture-Western | FSW = 0.0865
| Unknown | XLG2 (EXTRA-LARGE GTP-BINDING PROTEIN 2) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
AT1G69220 | Predictedin vivoin vitro | FSW = 0.0441
| Unknown | SIK1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G03730 | Predictedin vivoin vivoin vivoin vivoin vivoin vitro | FSW = 0.0917
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT3G25980 | PredictedSynthetic Lethality | FSW = 0.0131
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT2G29900 | PredictedPhenotypic Enhancement | FSW = 0.0462
| Unknown | PRESENILIN FAMILY PROTEIN |
AT3G28030 | PredictedPhenotypic Enhancement | FSW = 0.0321
| Unknown | UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING |
AT3G18430 | PredictedPhenotypic Suppression | FSW = 0.0566
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT5G63770 | PredictedPhenotypic SuppressionAffinity Capture-Western | FSW = 0.1109
| Unknown | ATDGK2 (DIACYLGLYCEROL KINASE 2) DIACYLGLYCEROL KINASE |
AT3G27530 | Predictedin vivoin vitro | FSW = 0.0070
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
AT5G18680 | Predictedin vivoin vitro | FSW = 0.1125
| Unknown | ATTLP11 (TUBBY LIKE PROTEIN 11) PHOSPHORIC DIESTER HYDROLASE/ TRANSCRIPTION FACTOR |
AT5G56580 | Predictedin vitroin vivotwo hybridAffinity Capture-MS | FSW = 0.0717
| Unknown | MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE |
AT5G57200 | Predictedin vitro | FSW = 0.0469
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED |
AT3G08960 | Predictedtwo hybrid | FSW = 0.0344
| Unknown | BINDING / PROTEIN TRANSPORTER |
AT5G59160 | PredictedAffinity Capture-MS | FSW = 0.0221
| Unknown | TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G50030 | Predictedtwo hybridAffinity Capture-Westerninterologs mappinginteraction prediction | FSW = 0.0216
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
AT2G13680 | PredictedPhenotypic Suppression | FSW = 0.0535
| Unknown | CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE |
AT2G43790 | Predictedsynthetic growth defect | FSW = 0.0359
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT5G17930 | PredictedAffinity Capture-Westerntwo hybridinterologs mappingsynthetic growth defectinteraction prediction | FSW = 0.0804
| Unknown | BINDING / PROTEIN BINDING |
AT5G42190 | PredictedSynthetic Lethality | FSW = 0.0061
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G48640 | PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.0184
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G55090 | Predictedinterologs mapping | FSW = 0.0191
| Unknown | MAPKKK15 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G63610 | PredictedPhenotypic Suppression | FSW = 0.0220
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G77740 | PredictedSynthetic Lethalityinterologs mapping | FSW = 0.0469
| Unknown | 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE PUTATIVE / PIP KINASE PUTATIVE / PTDINS(4)P-5-KINASE PUTATIVE / DIPHOSPHOINOSITIDE KINASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454