Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G43790 - ( ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP kinase/ kinase )
76 Proteins interacs with AT2G43790Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G63310 | Experimentaltwo hybrid | FSW = 0.0145
| Unknown | NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE/ PROTEIN BINDING |
AT1G51660 | Experimental | FSW = 0.0257
| Unknown | ATMKK4 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4) MAP KINASE KINASE/ KINASE |
AT2G47450 | Experimentalcompetition binding | FSW = 0.0409
| Unknown | CAO (CHAOS) CHROMATIN BINDING |
AT5G03940 | Experimentalcompetition binding | FSW = 0.0161
| Unknown | CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / SIGNAL SEQUENCE BINDING |
AT1G71860 | Experimentalprotein complementation assay | FSW = 0.0307
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT4G29810 | Experimentalprotein kinase assay | FSW = 0.1436
| Unknown | ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE |
AT5G54430 | Experimentalbiochemicalin vitro | FSW = 0.0643
| Unknown | UNIVERSAL STRESS PROTEIN (USP) FAMILY PROTEIN |
AT3G63400 | Experimental | FSW = 0.0281
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN |
AT2G30250 | Experimentalprotein kinase assay | FSW = 0.0643
| Unknown | WRKY25 TRANSCRIPTION FACTOR |
AT3G21220 | Experimental | FSW = 0.0122
| Unknown | ATMKK5 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5) MAP KINASE KINASE/ KINASE |
AT1G73500 | Experimentalprotein kinase assay | FSW = 0.0717
| Unknown | MKK9 (MAP KINASE KINASE 9) MAP KINASE KINASE/ KINASE/ PROTEIN KINASE ACTIVATOR |
AT5G61600 | Experimentalprotein kinase assay | FSW = 0.0563
| Unknown | ETHYLENE-RESPONSIVE ELEMENT-BINDING FAMILY PROTEIN |
AT5G56580 | Experimental | FSW = 0.1000
| Unknown | MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE |
AT1G10210 | Experimentaltwo hybridReconstituted Complexprotein complementation assay | FSW = 0.0874
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT2G40180 | Experimentaltwo hybridprotein complementation assay | FSW = 0.0429
| Unknown | ATHPP2C5 CATALYTIC/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G30020 | Experimentaltwo hybrid | FSW = 0.0259
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT3G55270 | Experimentalcoimmunoprecipitation | FSW = 0.0429
| Unknown | MKP1 (MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1) MAP KINASE TYROSINE/SERINE/THREONINE PHOSPHATASE |
AT4G01840 | PredictedAffinity Capture-Westernbiochemical | FSW = 0.0145
| Unknown | KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) OUTWARD RECTIFIER POTASSIUM CHANNEL |
AT1G07510 | PredictedSynthetic Lethality | FSW = 0.0078
| Unknown | FTSH10 (FTSH PROTEASE 10) ATP BINDING / ATPASE/ METALLOENDOPEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / ZINC ION BINDING |
AT4G01370 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.1961
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT1G80560 | PredictedPhenotypic Suppression | FSW = 0.0145
| Unknown | 3-ISOPROPYLMALATE DEHYDROGENASE CHLOROPLAST PUTATIVE |
AT3G11630 | PredictedAffinity Capture-Western | FSW = 0.0011
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT5G63110 | PredictedAffinity Capture-Western | FSW = 0.0262
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT4G35800 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternReconstituted Complex | FSW = 0.0197
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G34460 | PredictedSynthetic Rescue | FSW = 0.0103
| Unknown | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G48750 | PredictedSynthetic Rescue | FSW = 0.0101
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G52640 | Predictedtwo hybridPhenotypic Enhancement | FSW = 0.0186
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G10300 | Predictedtwo hybrid | FSW = 0.0129
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT1G06390 | PredictedPhylogenetic profile method | FSW = 0.1689
| Unknown | GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) GLYCOGEN SYNTHASE KINASE 3/ KINASE |
AT4G31750 | PredictedReconstituted Complexbiochemical | FSW = 0.0272
| Unknown | WIN2 (HOPW1-1-INTERACTING 2) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G02510 | PredictedAffinity Capture-Westernbiochemical | FSW = 0.0289
| Unknown | TPK4 OUTWARD RECTIFIER POTASSIUM CHANNEL |
AT4G18710 | PredictedShared biological functionPhylogenetic profile method | FSW = 0.2267
| Unknown | BIN2 (BRASSINOSTEROID-INSENSITIVE 2) GLYCOGEN SYNTHASE KINASE 3/ KINASE/ PROTEIN KINASE |
AT2G31660 | PredictedColocalization | FSW = 0.0313
| Unknown | SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) BINDING / PROTEIN TRANSPORTER |
AT1G18040 | PredictedAffinity Capture-WesternPhylogenetic profile methodCo-expression | FSW = 0.1038
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT4G38130 | PredictedAffinity Capture-Western | FSW = 0.0084
| Unknown | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
AT2G38560 | PredictedAffinity Capture-Western | FSW = 0.0470
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT4G16420 | PredictedAffinity Capture-Western | FSW = 0.0014
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT2G34770 | PredictedSynthetic Lethalityinteraction predictionShared biological functionCo-expression | FSW = 0.0051
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT2G39340 | PredictedSynthetic Lethality | FSW = 0.0610
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT1G07430 | PredictedSynthetic Rescuebiochemicalsynthetic growth defectSynthetic Rescue | FSW = 0.0348
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G08840 | PredictedSynthetic Lethality | FSW = 0.0110
| Unknown | EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING |
AT1G79730 | PredictedAffinity Capture-Western | FSW = 0.0367
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT2G17820 | PredictedPhenotypic Suppression | FSW = 0.0375
| Unknown | ATHK1 (HISTIDINE KINASE 1) HISTIDINE PHOSPHOTRANSFER KINASE/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT2G22530 | PredictedSynthetic Rescue | FSW = 0.0149
| Unknown | CATALYTIC/ TRANSFERASE |
AT3G12490 | PredictedAffinity Capture-MS | FSW = 0.0115
| Unknown | CYSTEINE PROTEASE INHIBITOR PUTATIVE / CYSTATIN PUTATIVE |
AT4G14320 | PredictedAffinity Capture-MS | FSW = 0.0055
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AB) |
AT5G17930 | PredictedSynthetic Lethalityinterologs mapping | FSW = 0.0912
| Unknown | BINDING / PROTEIN BINDING |
AT5G58690 | Predictedsynthetic growth defect | FSW = 0.0359
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT5G63670 | PredictedAffinity Capture-Western | FSW = 0.0402
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT3G01090 | PredictedPhenotypic Enhancement | FSW = 0.0368
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G03110 | PredictedColocalizationColocalizationAffinity Capture-WesternReconstituted Complex | FSW = 0.0058
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT3G18430 | PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.0327
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT3G19770 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0282
| Unknown | VPS9A RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT3G46960 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0110
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT3G49660 | PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.0386
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G22950 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0488
| Unknown | VPS241 |
AT5G61150 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0324
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT1G11650 | PredictedPhenotypic Enhancement | FSW = 0.0180
| Unknown | RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE |
AT4G26070 | Predictedin vivoin vivoin vitroin vitroAffinity Capture-Westernin vitroin vivoShared biological functionCo-expression | FSW = 0.1528
| Unknown | MEK1 (MAP KINASE/ ERK KINASE 1) MAP KINASE KINASE/ KINASE/ PROTEIN BINDING |
AT1G43900 | Predictedbiochemicalsynthetic growth defectSynthetic Rescue | FSW = 0.0316
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G27320 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0179
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT2G40116 | Predictedsynthetic growth defect | FSW = 0.0409
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT1G64750 | PredictedSynthetic Lethality | FSW = 0.0210
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
AT3G45000 | PredictedSynthetic Lethality | FSW = 0.0471
| Unknown | VPS242 |
AT1G15780 | PredictedSynthetic Rescue | FSW = 0.0241
| Unknown | UNKNOWN PROTEIN |
AT5G45010 | Predictedinteraction prediction | FSW = 0.0081
| Unknown | ATDSS1(V) (ARABIDOPSIS DSS1 HOMOLOG ON CHROMOSOME V) |
AT3G59790 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1757
| Unknown | ATMPK10 MAP KINASE/ KINASE |
AT1G59580 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.1287
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT4G36450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2877
| Unknown | ATMPK14 (MITOGEN-ACTIVATED PROTEIN KINASE 14) MAP KINASE/ KINASE |
AT2G18170 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2446
| Unknown | ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7) MAP KINASE/ KINASE |
AT1G07880 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1662
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT2G46070 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1567
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT3G45640 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.4232
| Unknown | ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) MAP KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT3G05840 | PredictedPhylogenetic profile method | FSW = 0.2328
| Unknown | ATSK12 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G26751 | PredictedPhylogenetic profile method | FSW = 0.1812
| Unknown | ATSK11 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G03010 | PredictedGene fusion method | FSW = 0.0225
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454