Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G29810 - ( ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP kinase kinase/ kinase )
45 Proteins interacs with AT4G29810Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G01370 | Experimentalprotein kinase assayprotein complementation assaytwo hybridsplit-reporter assay | FSW = 0.1146
| Class B:unclearplasma membranecytosolClass D:cytosol (p = 0.67) | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT2G43790 | Experimentalprotein kinase assay | FSW = 0.1436
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT4G11330 | Experimental | FSW = 0.0196
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT1G01560 | Experimentalprotein kinase assay | FSW = 0.1056
| Unknown | ATMPK11 MAP KINASE/ KINASE |
AT4G30480 | Experimental | FSW = 0.0119
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G07880 | Experimentalprotein kinase assay | FSW = 0.1439
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT3G59790 | Experimentalprotein kinase assay | FSW = 0.0777
| Unknown | ATMPK10 MAP KINASE/ KINASE |
AT4G08500 | Experimentalprotein complementation assaysplit-reporter assay | FSW = 0.0390
| Unknown | MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING |
AT1G10210 | Experimentaltwo hybrid | FSW = 0.0325
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT3G04120 | PredictedAffinity Capture-MS | FSW = 0.0076
| Class C:plasma membranecytosol | GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT5G38480 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0206
| Class C:plasma membranecytosol | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G57530 | Predictedbiochemical | FSW = 0.0320
| Class C:plasma membrane | CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32) CALCIUM-DEPENDENT PROTEIN KINASE C/ CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT1G10430 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0054
| Class C:plasma membrane | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G26110 | PredictedAffinity Capture-MS | FSW = 0.0102
| Class C:plasma membrane | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT2G01320 | PredictedPhenotypic SuppressionPhenotypic SuppressionPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0098
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT2G18510 | PredictedGene fusion method | FSW = 0.0237
| Unknown | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0139
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT4G22380 | PredictedAffinity Capture-MS | FSW = 0.0199
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT1G59900 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0095
| Unknown | AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT5G26780 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2) CATALYTIC/ GLYCINE HYDROXYMETHYLTRANSFERASE/ PYRIDOXAL PHOSPHATE BINDING |
AT1G18100 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0163
| Unknown | E12A11 PHOSPHATIDYLETHANOLAMINE BINDING |
AT1G04950 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0106
| Unknown | TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT2G17700 | PredictedPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic Suppression | FSW = 0.1280
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G21820 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.1634
| Unknown | BINDING / CALMODULIN BINDING |
AT5G19090 | PredictedPhenotypic Enhancement | FSW = 0.0188
| Unknown | HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
AT1G66620 | Predictedin vitroin vivo | FSW = 0.0918
| Unknown | SEVEN IN ABSENTIA (SINA) PROTEIN PUTATIVE |
AT1G07430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0223
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT3G01090 | PredictedPhenotypic Enhancement | FSW = 0.0163
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G09920 | Predictedinterologs mapping | FSW = 0.0133
| Unknown | PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE) 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE |
AT1G67070 | Predictedsynthetic growth defect | FSW = 0.0711
| Unknown | DIN9 (DARK INDUCIBLE 9) MANNOSE-6-PHOSPHATE ISOMERASE |
AT2G22530 | PredictedSynthetic Rescue | FSW = 0.0242
| Unknown | CATALYTIC/ TRANSFERASE |
AT5G55090 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westernbiochemical | FSW = 0.0654
| Unknown | MAPKKK15 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G17930 | Predictedinterologs mapping | FSW = 0.0744
| Unknown | BINDING / PROTEIN BINDING |
AT3G01490 | Predictedtwo hybrid | FSW = 0.0476
| Unknown | PROTEIN KINASE PUTATIVE |
AT5G23290 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0054
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT3G45640 | Predictedin vitroin vivotwo hybridShared biological functionCo-expression | FSW = 0.1636
| Unknown | ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) MAP KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G59580 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0993
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT4G35780 | PredictedPhenotypic Suppression | FSW = 0.0406
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G24940 | Predictedinteraction prediction | FSW = 0.0222
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT4G26070 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.3350
| Unknown | MEK1 (MAP KINASE/ ERK KINASE 1) MAP KINASE KINASE/ KINASE/ PROTEIN BINDING |
AT3G06230 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1000
| Unknown | ATMKK8 MAP KINASE KINASE/ KINASE |
AT1G18350 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1412
| Unknown | ATMKK7 MAP KINASE KINASE/ KINASE |
AT2G32510 | PredictedGene fusion methodCo-expression | FSW = 0.0421
| Unknown | MAPKKK17 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G56580 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1807
| Unknown | MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE |
AT3G12610 | PredictedShared biological functionGene fusion method | FSW = 0.0463
| Unknown | DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100) NUCLEOTIDE BINDING / PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454