Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G18100 - ( E12A11 phosphatidylethanolamine binding )
41 Proteins interacs with AT1G18100Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0259
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G55630 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternCo-purificationco-fractionationCo-fractionationSynthetic Lethality | FSW = 0.2353
| Unknown | ATKCO1 CALCIUM-ACTIVATED POTASSIUM CHANNEL/ ION CHANNEL/ OUTWARD RECTIFIER POTASSIUM CHANNEL |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G59280 | Predictedinterologs mappinginterologs mappinginterologs mappingPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.1985
| Unknown | TXR1 (THAXTOMIN A RESISTANT 1) |
AT4G01370 | PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT2G04940 | Predictedtwo hybrid | FSW = 0.0290
| Unknown | SCRAMBLASE-RELATED |
AT5G15450 | Predictedtwo hybrid | FSW = 0.0258
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G36230 | PredictedAffinity Capture-MS | FSW = 0.0211
| Unknown | APG10 (ALBINO AND PALE GREEN 10) 1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO]IMIDAZOLE-4-CARBOXAMIDE ISOMERASE |
AT5G51070 | PredictedSynthetic Rescue | FSW = 0.1182
| Unknown | ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G47370 | PredictedAffinity Capture-MS | FSW = 0.0166
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT2G18180 | PredictedPhenotypic Suppression | FSW = 0.0759
| Unknown | SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHOGLYCERIDE TRANSFER PROTEIN PUTATIVE |
AT4G29810 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0163
| Unknown | ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE |
AT5G47510 | PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G76810 | PredictedAffinity Capture-MS | FSW = 0.0067
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
AT1G53750 | PredictedAffinity Capture-MSAffinity Capture-MSSynthetic RescueAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Rescueinterologs mappingPhenotypic EnhancementPhenotypic Suppression | FSW = 0.0895
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT2G36380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-WesternSynthetic Lethality | FSW = 0.2602
| Unknown | PDR6 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G56760 | PredictedAffinity Capture-MS | FSW = 0.0242
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT4G00520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Suppression | FSW = 0.1570
| Unknown | ACYL-COA THIOESTERASE FAMILY PROTEIN |
AT1G29960 | PredictedAffinity Capture-MS | FSW = 0.2049
| Unknown | PEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT1G55520 | PredictedAffinity Capture-MS | FSW = 0.0071
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT1G63490 | PredictedAffinity Capture-MS | FSW = 0.0493
| Unknown | TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN |
AT1G65480 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0967
| Unknown | FT (FLOWERING LOCUS T) PHOSPHATIDYLETHANOLAMINE BINDING / PROTEIN BINDING |
AT5G03840 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0925
| Unknown | TFL1 (TERMINAL FLOWER 1) PHOSPHATIDYLETHANOLAMINE BINDING |
AT2G27550 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0760
| Unknown | ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) PHOSPHATIDYLETHANOLAMINE BINDING |
AT3G54820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationsynthetic growth defectSynthetic Lethality | FSW = 0.1222
| Unknown | PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL |
AT5G62040 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2128
| Unknown | BROTHER OF FT AND TFL1 PROTEIN (BFT) |
AT1G19730 | PredictedAffinity Capture-MSAffinity Capture-MSPhenotypic EnhancementAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic RescueAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionationSynthetic RescuePhenotypic Enhancement | FSW = 0.1218
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT3G22880 | Predictedtwo hybrid | FSW = 0.0107
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G26320 | PredictedSynthetic Lethality | FSW = 0.0135
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT2G03040 | Predictedtwo hybrid | FSW = 0.0084
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT1G30220 | PredictedAffinity Capture-MS | FSW = 0.0222
| Unknown | INT2 (INOSITOL TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G35530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0535
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G66810 | PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT1G80460 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Rescue | FSW = 0.1381
| Unknown | NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE |
AT3G25597 | PredictedAffinity Capture-MS | FSW = 0.0444
| Unknown | UNKNOWN PROTEIN |
AT3G50845 | PredictedAffinity Capture-MS | FSW = 0.0454
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF59 (INTERPROIPR002744) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS VACUOLAR SORTING SIGNAL BINDING (TAIRAT1G683102) HAS 415 BLAST HITS TO 414 PROTEINS IN 153 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 216 FUNGI - 86 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 72 (SOURCE NCBI BLINK) |
AT4G00800 | PredictedAffinity Capture-MS | FSW = 0.0116
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G17640 | PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | CKB2 PROTEIN KINASE CK2 REGULATOR |
AT4G32850 | PredictedAffinity Capture-MS | FSW = 0.0302
| Unknown | NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING |
AT5G25520 | PredictedAffinity Capture-MS | FSW = 0.0348
| Unknown | TRANSCRIPTION ELONGATION FACTOR-RELATED |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454