Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G80460 - ( NHO1 (nonhost resistance to P s phaseolicola 1) carbohydrate kinase/ glycerol kinase )

36 Proteins interacs with AT1G80460
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G36530

Predicted

comigration in non denaturing gel electrophoresis

FSW = 0.0233

Unknown

LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE
AT5G55630

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.2609

Unknown

ATKCO1 CALCIUM-ACTIVATED POTASSIUM CHANNEL/ ION CHANNEL/ OUTWARD RECTIFIER POTASSIUM CHANNEL
AT2G39290

Predicted

Affinity Capture-MS

FSW = 0.0172

Unknown

PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE
AT5G62880

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0726

Unknown

ARAC10 GTP BINDING
AT1G49340

Predicted

Affinity Capture-MS

FSW = 0.0186

Unknown

ATPI4K ALPHA 1-PHOSPHATIDYLINOSITOL 4-KINASE/ INOSITOL OR PHOSPHATIDYLINOSITOL KINASE
AT3G13560

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

Reconstituted Complex

far western blotting

interologs mapping

Phenotypic Suppression

FSW = 0.0965

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT3G45780

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0167

Unknown

PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0033

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT2G36380

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2521

Unknown

PDR6 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G53750

Predicted

Affinity Capture-MS

FSW = 0.0704

Unknown

RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT5G22780

Predicted

Affinity Capture-MS

FSW = 0.0557

Unknown

ADAPTIN FAMILY PROTEIN
AT4G38680

Predicted

pull down

FSW = 0.0079

Unknown

GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT4G00520

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.2600

Unknown

ACYL-COA THIOESTERASE FAMILY PROTEIN
AT1G29960

Predicted

Affinity Capture-MS

FSW = 0.1536

Unknown

PEPTIDASE/ SERINE-TYPE PEPTIDASE
AT1G07470

Predicted

synthetic growth defect

FSW = 0.0411

Unknown

TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE
AT4G05450

Predicted

pull down

FSW = 0.0256

Unknown

ADRENODOXIN-LIKE FERREDOXIN 2
AT5G08380

Predicted

two hybrid

FSW = 0.0141

Unknown

ATAGAL1 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 1) ALPHA-GALACTOSIDASE/ CATALYTIC/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT5G18380

Predicted

Dosage Growth Defect

Reconstituted Complex

FSW = 0.0933

Unknown

40S RIBOSOMAL PROTEIN S16 (RPS16C)
AT3G54820

Predicted

Affinity Capture-MS

Affinity Capture-MS

co-fractionation

Co-fractionation

FSW = 0.2697

Unknown

PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL
AT4G10920

Predicted

two hybrid

FSW = 0.0757

Unknown

KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR
AT1G18100

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Synthetic Rescue

FSW = 0.1381

Unknown

E12A11 PHOSPHATIDYLETHANOLAMINE BINDING
AT1G19730

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interologs mapping

FSW = 0.0965

Unknown

ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT5G06420

Predicted

two hybrid

FSW = 0.0111

Unknown

ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT1G71800

Predicted

two hybrid

FSW = 0.0410

Unknown

CLEAVAGE STIMULATION FACTOR PUTATIVE
AT5G27320

Predicted

two hybrid

FSW = 0.0241

Unknown

GID1C (GA INSENSITIVE DWARF1C) HYDROLASE
AT4G26860

Predicted

pull down

FSW = 0.0250

Unknown

PYRIDOXAL PHOSPHATE BINDING
AT1G53880Predicted

Affinity Capture-MS

FSW = 0.0196

Unknown

GTP BINDING / TRANSLATION INITIATION FACTOR
AT1G57600

Predicted

Phenotypic Enhancement

FSW = 0.0138

Unknown

MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN
AT1G63370

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1194

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT3G04710

Predicted

interologs mapping

FSW = 0.0055

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT3G59790

Predicted

Affinity Capture-MS

FSW = 0.0411

Unknown

ATMPK10 MAP KINASE/ KINASE
AT4G27690

Predicted

Synthetic Rescue

FSW = 0.1323

Unknown

VPS26B (VACUOLAR PROTEIN SORTING 26B)
AT5G20600

Predicted

Affinity Capture-MS

FSW = 0.0073

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT1G01350

Predicted

two hybrid

FSW = 0.0456

Unknown

NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT1G72340

Predicted

interaction prediction

FSW = 0.0070

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN
AT1G74900

Predicted

Gene fusion method

FSW = 0.0216

Unknown

OTP43 (ORGANELLE TRANSCRIPT PROCESSING DEFECT 43)

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454