Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G80460 - ( NHO1 (nonhost resistance to P s phaseolicola 1) carbohydrate kinase/ glycerol kinase )
36 Proteins interacs with AT1G80460Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G36530 | Predictedcomigration in non denaturing gel electrophoresis | FSW = 0.0233
| Unknown | LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE |
AT5G55630 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2609
| Unknown | ATKCO1 CALCIUM-ACTIVATED POTASSIUM CHANNEL/ ION CHANNEL/ OUTWARD RECTIFIER POTASSIUM CHANNEL |
AT2G39290 | PredictedAffinity Capture-MS | FSW = 0.0172
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT5G62880 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0726
| Unknown | ARAC10 GTP BINDING |
AT1G49340 | PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | ATPI4K ALPHA 1-PHOSPHATIDYLINOSITOL 4-KINASE/ INOSITOL OR PHOSPHATIDYLINOSITOL KINASE |
AT3G13560 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexReconstituted Complexfar western blottinginterologs mappingPhenotypic Suppression | FSW = 0.0965
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT3G45780 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0167
| Unknown | PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0033
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G36380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2521
| Unknown | PDR6 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G53750 | PredictedAffinity Capture-MS | FSW = 0.0704
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT5G22780 | PredictedAffinity Capture-MS | FSW = 0.0557
| Unknown | ADAPTIN FAMILY PROTEIN |
AT4G38680 | Predictedpull down | FSW = 0.0079
| Unknown | GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
AT4G00520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2600
| Unknown | ACYL-COA THIOESTERASE FAMILY PROTEIN |
AT1G29960 | PredictedAffinity Capture-MS | FSW = 0.1536
| Unknown | PEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT1G07470 | Predictedsynthetic growth defect | FSW = 0.0411
| Unknown | TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE |
AT4G05450 | Predictedpull down | FSW = 0.0256
| Unknown | ADRENODOXIN-LIKE FERREDOXIN 2 |
AT5G08380 | Predictedtwo hybrid | FSW = 0.0141
| Unknown | ATAGAL1 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 1) ALPHA-GALACTOSIDASE/ CATALYTIC/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G18380 | PredictedDosage Growth DefectReconstituted Complex | FSW = 0.0933
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16C) |
AT3G54820 | PredictedAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionation | FSW = 0.2697
| Unknown | PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL |
AT4G10920 | Predictedtwo hybrid | FSW = 0.0757
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT1G18100 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Rescue | FSW = 0.1381
| Unknown | E12A11 PHOSPHATIDYLETHANOLAMINE BINDING |
AT1G19730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mapping | FSW = 0.0965
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT5G06420 | Predictedtwo hybrid | FSW = 0.0111
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G71800 | Predictedtwo hybrid | FSW = 0.0410
| Unknown | CLEAVAGE STIMULATION FACTOR PUTATIVE |
AT5G27320 | Predictedtwo hybrid | FSW = 0.0241
| Unknown | GID1C (GA INSENSITIVE DWARF1C) HYDROLASE |
AT4G26860 | Predictedpull down | FSW = 0.0250
| Unknown | PYRIDOXAL PHOSPHATE BINDING |
AT1G53880 | PredictedAffinity Capture-MS | FSW = 0.0196
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT1G57600 | PredictedPhenotypic Enhancement | FSW = 0.0138
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT1G63370 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1194
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT3G04710 | Predictedinterologs mapping | FSW = 0.0055
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G59790 | PredictedAffinity Capture-MS | FSW = 0.0411
| Unknown | ATMPK10 MAP KINASE/ KINASE |
AT4G27690 | PredictedSynthetic Rescue | FSW = 0.1323
| Unknown | VPS26B (VACUOLAR PROTEIN SORTING 26B) |
AT5G20600 | PredictedAffinity Capture-MS | FSW = 0.0073
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
AT1G01350 | Predictedtwo hybrid | FSW = 0.0456
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT1G72340 | Predictedinteraction prediction | FSW = 0.0070
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT1G74900 | PredictedGene fusion method | FSW = 0.0216
| Unknown | OTP43 (ORGANELLE TRANSCRIPT PROCESSING DEFECT 43) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454