Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G20600 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN rRNA processing LOCATED IN preribosome small subunit precursor EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Nucleolar Nop52 (InterProIPR010301) Has 444 Blast hits to 431 proteins in 151 species Archae - 0 Bacteria - 10 Metazoa - 196 Fungi - 114 Plants - 27 Viruses - 0 Other Eukaryotes - 97 (source NCBI BLink) )

53 Proteins interacs with AT5G20600
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G42740

Predicted

Affinity Capture-MS

FSW = 0.1540

Unknown

RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G67430

Predicted

Affinity Capture-MS

FSW = 0.1466

Unknown

60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT3G10410

Predicted

Affinity Capture-MS

FSW = 0.0260

Unknown

SCPL49 (SERINE CARBOXYPEPTIDASE-LIKE 49) SERINE-TYPE CARBOXYPEPTIDASE
AT3G22845

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0446

Unknown

EMP24/GP25L/P24 PROTEIN-RELATED
AT1G17290

Predicted

Affinity Capture-MS

FSW = 0.0286

Unknown

ALAAT1 (ALANINE AMINOTRANSFERAS) ATP BINDING / L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE
AT5G43530

Predicted

Affinity Capture-MS

FSW = 0.0155

Unknown

SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT3G01610

Predicted

Affinity Capture-MS

FSW = 0.3459

Unknown

CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G39740

Predicted

Affinity Capture-MS

FSW = 0.3401

Unknown

60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT3G11964Predicted

Affinity Capture-MS

FSW = 0.1809

Unknown

RNA BINDING
AT3G18190

Predicted

Affinity Capture-MS

FSW = 0.0082

Unknown

CHAPERONIN PUTATIVE
AT5G46430

Predicted

Affinity Capture-MS

FSW = 0.1157

Unknown

60S RIBOSOMAL PROTEIN L32 (RPL32B)
AT1G70600

Predicted

Affinity Capture-MS

FSW = 0.1466

Unknown

STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G53870

Predicted

Affinity Capture-MS

FSW = 0.0293

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT2G40360

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3695

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G04600

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3534

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G44860

Predicted

Affinity Capture-MS

FSW = 0.2429

Unknown

60S RIBOSOMAL PROTEIN L24 PUTATIVE
AT3G58660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4301

Unknown

60S RIBOSOMAL PROTEIN-RELATED
AT3G55620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3025

Unknown

EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT1G72440

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3484

Unknown

EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT3G23620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4266

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT3G16810

Predicted

Affinity Capture-MS

FSW = 0.3932

Unknown

APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT5G05210

Predicted

Affinity Capture-MS

FSW = 0.1091

Unknown

NUCLEOLAR MATRIX PROTEIN-RELATED
AT5G48240

Predicted

Affinity Capture-MS

FSW = 0.2956

Unknown

UNKNOWN PROTEIN
AT5G55920

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4536

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT3G62310

Predicted

Affinity Capture-MS

FSW = 0.1621

Unknown

RNA HELICASE PUTATIVE
AT4G08350

Predicted

Affinity Capture-MS

FSW = 0.0413

Unknown

GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT5G15550

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3749

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G43430

Predicted

Affinity Capture-MS

FSW = 0.0189

Unknown

ETFBETA ELECTRON CARRIER
AT1G50920

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4721

Unknown

GTP-BINDING PROTEIN-RELATED
AT3G22660

Predicted

Affinity Capture-MS

FSW = 0.4586

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT1G61580

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.3128

Unknown

RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G23280

Predicted

Affinity Capture-MS

FSW = 0.1600

Unknown

MAK16 PROTEIN-RELATED
AT1G25260

Predicted

Affinity Capture-MS

FSW = 0.2573

Unknown

ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT2G18220

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4307

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT2G21440

Predicted

Affinity Capture-MS

FSW = 0.3195

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G15460

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4669

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT3G18740

Predicted

Affinity Capture-MS

FSW = 0.1748

Unknown

60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G55280

Predicted

Affinity Capture-MS

FSW = 0.2674

Unknown

RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G01560

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4780

Unknown

MEE49 (MATERNAL EFFECT EMBRYO ARREST 49)
AT4G15770

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3788

Unknown

RNA BINDING / PROTEIN BINDING
AT4G16630

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5264

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH28)
AT5G05450

Predicted

Affinity Capture-MS

FSW = 0.5625

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH18)
AT5G06360

Predicted

Affinity Capture-MS

FSW = 0.2760

Unknown

RIBOSOMAL PROTEIN S8E FAMILY PROTEIN
AT5G14520

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3736

Unknown

PESCADILLO-RELATED
AT1G80460

Predicted

Affinity Capture-MS

FSW = 0.0073

Unknown

NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE
AT2G24940

Predicted

Affinity Capture-MS

FSW = 0.0260

Unknown

ATMAPR2 (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 2) HEME BINDING
AT2G25710

Predicted

Affinity Capture-MS

FSW = 0.0408

Unknown

HCS1 (HOLOCARBOXYLASE SYNTHASE) BIOTIN-[ACETYL-COA-CARBOXYLASE] LIGASE/ CATALYTIC
AT3G02820

Predicted

Affinity Capture-MS

FSW = 0.0117

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G15970

Predicted

Affinity Capture-MS

FSW = 0.0124

Unknown

RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN
AT4G08500

Predicted

biochemical

FSW = 0.0160

Unknown

MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING
AT5G27740

Predicted

Affinity Capture-MS

FSW = 0.0100

Unknown

EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G61770

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3753

Unknown

PPAN (PETER PAN-LIKE PROTEIN)
AT5G65900

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4105

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454