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AT3G62310 - ( RNA helicase putative )

102 Proteins interacs with AT3G62310

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G15200	Predicted Affinity Capture-MS	FSW = 0.1499	Class C: nucleus	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT1G20960	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1116	Class C: nucleus	EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G20290	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1575	Class C: nucleus	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT1G09760	Predicted Affinity Capture-MS	FSW = 0.0870	Class C: nucleus	U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING
AT1G09770	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1070	Class C: nucleus	ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR
AT3G03920	Predicted Affinity Capture-MS	FSW = 0.0615	Class C: nucleus	GAR1 RNA-BINDING REGION FAMILY PROTEIN
AT3G11964	Predicted Affinity Capture-MS	FSW = 0.2256	Class C: nucleus	RNA BINDING
AT5G39740	Predicted Affinity Capture-MS	FSW = 0.2370	Class C: nucleus	60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT4G00100	Predicted Affinity Capture-MS	FSW = 0.1712	Class C: nucleus	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G04600	Predicted Affinity Capture-MS	FSW = 0.2980	Class C: nucleus	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G57660	Predicted Affinity Capture-MS Affinity Capture-Western	FSW = 0.0461	Class C: nucleus	NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING
AT3G58660	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2891	Class C: nucleus	60S RIBOSOMAL PROTEIN-RELATED
AT3G13940	Predicted Affinity Capture-MS	FSW = 0.0241	Class C: nucleus	DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G57150	Predicted Affinity Capture-MS	FSW = 0.1634	Class C: nucleus	NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE
AT5G08180	Predicted Affinity Capture-MS	FSW = 0.1439	Class C: nucleus	RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT3G05060	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2426	Class C: nucleus	SAR DNA-BINDING PROTEIN PUTATIVE
AT3G12860	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2681	Class C: nucleus	NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT1G21700	Predicted Affinity Capture-MS	FSW = 0.0164	Class C: nucleus	ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT5G19310	Predicted Affinity Capture-MS	FSW = 0.0178	Class C: nucleus	HOMEOTIC GENE REGULATOR PUTATIVE
AT2G47640	Predicted Affinity Capture-MS	FSW = 0.0376	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT4G25630	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2771	Class C: nucleus	FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT5G37720	Predicted Affinity Capture-MS	FSW = 0.0834	Class C: nucleus	RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G72440	Predicted Affinity Capture-MS	FSW = 0.1869	Class C: nucleus	EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT1G20580	Predicted Affinity Capture-MS	FSW = 0.0957	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G48920	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0723	Class C: nucleus	ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G05210	Predicted Affinity Capture-MS	FSW = 0.1157	Class C: nucleus	NUCLEOLAR MATRIX PROTEIN-RELATED
AT3G18130	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0728	Class C: nucleus	RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT1G05055	Predicted Affinity Capture-MS	FSW = 0.0089	Class C: nucleus	GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT4G25340	Predicted Affinity Capture-MS	FSW = 0.0181	Class C: nucleus	IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT1G63810	Predicted Affinity Capture-MS	FSW = 0.2256	Class C: nucleus	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT4G30220	Predicted Affinity Capture-MS interaction prediction Co-expression	FSW = 0.0821	Class C: nucleus	RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
AT4G22380	Predicted Affinity Capture-MS	FSW = 0.1240	Class C: nucleus	RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT3G17590	Predicted Affinity Capture-MS	FSW = 0.0147	Class C: nucleus	BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT2G17360	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1381	Unknown	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT1G07770	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1602	Unknown	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G09650	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0226	Unknown	ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT1G18080	Predicted interaction prediction	FSW = 0.0334	Unknown	ATARCA NUCLEOTIDE BINDING
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.1025	Unknown	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT3G06530	Predicted Affinity Capture-MS	FSW = 0.2303	Unknown	BINDING
AT2G33340	Predicted Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS	FSW = 0.1083	Unknown	NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G47250	Predicted Phylogenetic profile method Co-expression	FSW = 0.3759	Unknown	RNA HELICASE PUTATIVE
AT1G80070	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0900	Unknown	SUS2 (ABNORMAL SUSPENSOR 2)
AT3G16000	Predicted Gene fusion method	FSW = 0.0212	Unknown	MFP1 (MAR BINDING FILAMENT-LIKE PROTEIN 1) DNA BINDING
AT3G53430	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0607	Unknown	60S RIBOSOMAL PROTEIN L12 (RPL12B)
AT2G40360	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1434	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G17465	Predicted Affinity Capture-MS interaction prediction Co-expression	FSW = 0.0199	Unknown	RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G47990	Predicted Affinity Capture-MS	FSW = 0.1160	Unknown	SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT1G50920	Predicted Affinity Capture-MS	FSW = 0.2216	Unknown	GTP-BINDING PROTEIN-RELATED
AT4G15900	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.0694	Unknown	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G22660	Predicted Affinity Capture-MS	FSW = 0.1879	Unknown	RRNA PROCESSING PROTEIN-RELATED
AT5G18380	Predicted Affinity Capture-MS	FSW = 0.0378	Unknown	40S RIBOSOMAL PROTEIN S16 (RPS16C)
AT1G10490	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1766	Unknown	UNKNOWN PROTEIN
AT5G52650	Predicted Affinity Capture-MS	FSW = 0.0524	Unknown	40S RIBOSOMAL PROTEIN S10 (RPS10C)
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.2287	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G30800	Predicted Affinity Capture-MS	FSW = 0.0893	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT2G29540	Predicted Affinity Capture-MS	FSW = 0.0095	Unknown	ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G04950	Predicted Affinity Capture-MS	FSW = 0.0244	Unknown	TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G06720	Predicted Affinity Capture-MS	FSW = 0.1505	Unknown	INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK)
AT1G16350	Predicted Affinity Capture-MS	FSW = 0.1284	Unknown	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE
AT1G17070	Predicted two hybrid Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS co-fractionation Co-fractionation Affinity Capture-MS two hybrid Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS co-fractionation Co-fractionation two hybrid biochemical Reconstituted Complex Synthetic Lethality synthetic growth defect	FSW = 0.1412	Unknown	D111/G-PATCH DOMAIN-CONTAINING PROTEIN
AT1G25260	Predicted Affinity Capture-MS	FSW = 0.0923	Unknown	ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G29940	Predicted Affinity Capture-MS	FSW = 0.0145	Unknown	NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT1G49760	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1001	Unknown	PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G52740	Predicted Affinity Capture-MS	FSW = 0.0087	Unknown	HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G52980	Predicted Affinity Capture-MS	FSW = 0.0808	Unknown	GTP-BINDING FAMILY PROTEIN
AT1G55150	Predicted Affinity Capture-MS	FSW = 0.0405	Unknown	DEAD BOX RNA HELICASE PUTATIVE (RH20)
AT2G24990	Predicted Affinity Capture-MS	FSW = 0.0340	Unknown	RIO1 FAMILY PROTEIN
AT2G27200	Predicted Affinity Capture-MS	FSW = 0.0823	Unknown	GTP-BINDING FAMILY PROTEIN
AT2G34357	Predicted Affinity Capture-MS	FSW = 0.2655	Unknown	BINDING
AT2G40430	Predicted Affinity Capture-MS	FSW = 0.1143	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK)
AT3G15460	Predicted Affinity Capture-MS	FSW = 0.1806	Unknown	BRIX DOMAIN-CONTAINING PROTEIN
AT3G24080	Predicted Affinity Capture-MS	FSW = 0.2296	Unknown	KRR1 FAMILY PROTEIN
AT1G15440	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.0939	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G17130	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0732	Unknown	CELL CYCLE CONTROL PROTEIN-RELATED
AT1G59760	Predicted Affinity Capture-MS	FSW = 0.0694	Unknown	ATP-DEPENDENT RNA HELICASE PUTATIVE
AT1G72320	Predicted Affinity Capture-MS	FSW = 0.2239	Unknown	APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING
AT2G18220	Predicted Affinity Capture-MS	FSW = 0.1973	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT2G36930	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0728	Unknown	ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT3G09100	Predicted Affinity Capture-MS interaction prediction Co-expression	FSW = 0.0187	Unknown	MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G56510	Predicted Affinity Capture-MS	FSW = 0.1271	Unknown	TBP-BINDING PROTEIN PUTATIVE
AT5G28740	Predicted Affinity Capture-MS	FSW = 0.1113	Unknown	TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED
AT5G66100	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1345	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT4G01560	Predicted Affinity Capture-MS	FSW = 0.1265	Unknown	MEE49 (MATERNAL EFFECT EMBRYO ARREST 49)
AT4G02400	Predicted Affinity Capture-MS	FSW = 0.0514	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN SMALL-SUBUNIT PROCESSOME EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SMALL-SUBUNIT PROCESSOME UTP14 (INTERPROIPR006709) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS U3 RIBONUCLEOPROTEIN (UTP) FAMILY PROTEIN (TAIRAT5G086001) HAS 7412 BLAST HITS TO 4272 PROTEINS IN 301 SPECIES ARCHAE - 10 BACTERIA - 517 METAZOA - 2926 FUNGI - 722 PLANTS - 242 VIRUSES - 149 OTHER EUKARYOTES - 2846 (SOURCE NCBI BLINK)
AT4G21110	Predicted Affinity Capture-MS	FSW = 0.0933	Unknown	G10 FAMILY PROTEIN
AT4G25730	Predicted Affinity Capture-MS	FSW = 0.0770	Unknown	FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN
AT4G30991	Predicted Affinity Capture-MS	FSW = 0.2181	Unknown	FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN
AT5G06360	Predicted Affinity Capture-MS	FSW = 0.1338	Unknown	RIBOSOMAL PROTEIN S8E FAMILY PROTEIN
AT5G08420	Predicted Affinity Capture-MS	FSW = 0.1747	Unknown	RNA BINDING
AT5G20600	Predicted Affinity Capture-MS	FSW = 0.1621	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT5G41770	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.0811	Unknown	CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT5G46840	Predicted Affinity Capture-MS	FSW = 0.1212	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G52820	Predicted Affinity Capture-MS	FSW = 0.0753	Unknown	WD-40 REPEAT FAMILY PROTEIN / NOTCHLESS PROTEIN PUTATIVE
AT5G53770	Predicted Affinity Capture-MS	FSW = 0.0358	Unknown	NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT5G55190	Predicted Affinity Capture-MS	FSW = 0.0101	Unknown	RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G61770	Predicted Affinity Capture-MS	FSW = 0.1003	Unknown	PPAN (PETER PAN-LIKE PROTEIN)
AT5G65900	Predicted Affinity Capture-MS	FSW = 0.3340	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT2G43650	Predicted interaction prediction Co-expression	FSW = 0.0272	Unknown	EMB2777 (EMBRYO DEFECTIVE 2777)
AT1G26370	Predicted Phylogenetic profile method Co-expression	FSW = 0.0494	Unknown	RNA HELICASE PUTATIVE
AT1G27900	Predicted Phylogenetic profile method Co-expression	FSW = 0.0494	Unknown	RNA HELICASE PUTATIVE
AT4G18465	Predicted Phylogenetic profile method Co-expression	FSW = 0.0331	Unknown	RNA HELICASE PUTATIVE
AT4G39952	Predicted Gene fusion method	FSW = 0.0226	Unknown	PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT3G62310 - ( RNA helicase putative )

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