Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G22660 - ( rRNA processing protein-related )
43 Proteins interacs with AT3G22660Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.1080
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G06380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2010
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT5G39740 | PredictedAffinity Capture-MS | FSW = 0.3166
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT1G70600 | PredictedAffinity Capture-MS | FSW = 0.1363
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G40360 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3635
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G10730 | Predictedtwo hybrid | FSW = 0.0479
| Unknown | SAD1/UNC-84-LIKE 2 FAMILY PROTEIN |
AT5G04600 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3536
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G58660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4312
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT1G72440 | PredictedAffinity Capture-MS | FSW = 0.3777
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT3G23620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.4633
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT4G17390 | PredictedAffinity Capture-MS | FSW = 0.2049
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
AT5G05210 | Predictedtwo hybrid | FSW = 0.1671
| Unknown | NUCLEOLAR MATRIX PROTEIN-RELATED |
AT5G55920 | PredictedAffinity Capture-MS | FSW = 0.4518
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT2G19385 | PredictedAffinity Capture-MS | FSW = 0.1407
| Unknown | ZINC ION BINDING |
AT3G62310 | PredictedAffinity Capture-MS | FSW = 0.1879
| Unknown | RNA HELICASE PUTATIVE |
AT2G37990 | Predictedtwo hybridtwo hybridtwo hybridAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.3421
| Unknown | RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN |
AT1G63810 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0871
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
AT5G15550 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3660
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G50920 | PredictedAffinity Capture-MS | FSW = 0.4381
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.3388
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G17870 | PredictedAffinity Capture-MS | FSW = 0.0850
| Unknown | COLD-SHOCK DNA-BINDING FAMILY PROTEIN |
AT4G36020 | PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
AT1G79150 | PredictedAffinity Capture-MS | FSW = 0.4767
| Unknown | BINDING |
AT2G18220 | PredictedAffinity Capture-MS | FSW = 0.5287
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
AT3G15460 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.5075
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT1G03530 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0796
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
AT2G39340 | PredictedAffinity Capture-MS | FSW = 0.0702
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT2G40430 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1796
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK) |
AT4G01560 | PredictedAffinity Capture-MS | FSW = 0.4705
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
AT4G18905 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0640
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G25730 | PredictedAffinity Capture-MS | FSW = 0.2703
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
AT5G05450 | PredictedAffinity Capture-MS | FSW = 0.4972
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH18) |
AT5G14520 | PredictedAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.3714
| Unknown | PESCADILLO-RELATED |
AT5G20600 | PredictedAffinity Capture-MS | FSW = 0.4586
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
AT5G61770 | Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3290
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
AT3G55280 | PredictedAffinity Capture-MS | FSW = 0.2892
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G15770 | PredictedAffinity Capture-MS | FSW = 0.4109
| Unknown | RNA BINDING / PROTEIN BINDING |
AT4G16630 | PredictedAffinity Capture-MS | FSW = 0.5731
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
AT4G34910 | PredictedAffinity Capture-MS | FSW = 0.2795
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
AT5G65900 | PredictedAffinity Capture-MS | FSW = 0.3923
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT4G18900 | PredictedAffinity Capture-MS | FSW = 0.0552
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G09670 | PredictedAffinity Capture-MS | FSW = 0.1200
| Unknown | PWWP DOMAIN-CONTAINING PROTEIN |
AT1G52930 | PredictedAffinity Capture-MSCo-expression | FSW = 0.3846
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454