Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G37990 - ( ribosome biogenesis regulatory protein (RRS1) family protein )
47 Proteins interacs with AT2G37990| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G42740
   | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-Westerntwo hybridCo-purificationCo-expression | FSW = 0.1055
| Class C:nucleus | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G09200
| PredictedAffinity Capture-Western | FSW = 0.0663
| Class C:nucleus | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
| AT2G47610
| PredictedAffinity Capture-MS | FSW = 0.0796
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT1G43170
| PredictedAffinity Capture-WesternCo-expression | FSW = 0.1412
| Class C:nucleus | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G11964 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2406
| Class C:nucleus | RNA BINDING |
| AT5G39740
| PredictedAffinity Capture-Westerntwo hybridAffinity Capture-WesternProtein-RNAReconstituted ComplexAffinity Capture-MSCo-purification | FSW = 0.1722
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
| AT3G10730
| Predictedtwo hybrid | FSW = 0.0441
| Class C:nucleus | SAD1/UNC-84-LIKE 2 FAMILY PROTEIN |
| AT5G67270
| PredictedAffinity Capture-MS | FSW = 0.0106
| Class C:nucleus | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
| AT5G04600
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1601
| Class C:nucleus | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT4G26600
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0978
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
| AT3G58660
| PredictedAffinity Capture-MS | FSW = 0.1617
| Class C:nucleus | 60S RIBOSOMAL PROTEIN-RELATED |
| AT5G37720
| PredictedAffinity Capture-MS | FSW = 0.1162
| Class C:nucleus | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT3G23620
| Predictedtwo hybridAffinity Capture-MSfar western blottingCo-purificationAffinity Capture-Westerntwo hybridAffinity Capture-MSco-fractionationCo-fractionationfar western blottingCo-expression | FSW = 0.4006
| Class C:nucleus | BRIX DOMAIN-CONTAINING PROTEIN |
| AT4G17390
| PredictedAffinity Capture-MS | FSW = 0.1290
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
| AT5G54910
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0971
| Class C:nucleus | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT5G55920
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2343
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
| AT1G63810
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0941
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
| AT4G18730 | Predictedtwo hybridAffinity Capture-Westerntwo hybridAffinity Capture-Westerntwo hybridCo-purificationfar western blottinginteraction prediction | FSW = 0.1576
| Unknown | RPL16B STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G06530
| PredictedAffinity Capture-MS | FSW = 0.0768
| Unknown | BINDING |
| AT1G06380
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1414
| Unknown | RIBOSOMAL PROTEIN-RELATED |
| AT1G64230
| PredictedAffinity Capture-MS | FSW = 0.0122
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
| AT3G47690
| PredictedAffinity Capture-MS | FSW = 0.0140
| Unknown | ATEB1A MICROTUBULE BINDING |
| AT2G37560
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0262
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
| AT3G22660
| Predictedtwo hybridtwo hybridtwo hybridAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.3421
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
| AT1G61580
| PredictedAffinity Capture-Western | FSW = 0.1528
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G52980
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1149
| Unknown | GTP-BINDING FAMILY PROTEIN |
| AT1G59760
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0742
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
| AT1G68650
| PredictedAffinity Capture-MS | FSW = 0.0588
| Unknown | UNKNOWN PROTEIN |
| AT1G79150
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2615
| Unknown | BINDING |
| AT2G18220
| PredictedAffinity Capture-MSCo-expression | FSW = 0.3265
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
| AT2G27200
| PredictedAffinity Capture-MS | FSW = 0.1604
| Unknown | GTP-BINDING FAMILY PROTEIN |
| AT2G39340
| PredictedAffinity Capture-MS | FSW = 0.1270
| Unknown | SAC3/GANP FAMILY PROTEIN |
| AT2G40700
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1624
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH17) |
| AT3G01160
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1391
| Unknown | UNKNOWN PROTEIN |
| AT4G19006
| PredictedAffinity Capture-MS | FSW = 0.0124
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
| AT5G14520
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2096
| Unknown | PESCADILLO-RELATED |
| AT5G23540
| PredictedAffinity Capture-MS | FSW = 0.0112
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT5G25800
| PredictedSynthetic Lethality | FSW = 0.0091
| Unknown | EXONUCLEASE FAMILY PROTEIN |
| AT5G41700
| PredictedAffinity Capture-MS | FSW = 0.0051
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT5G61770
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1360
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
| AT5G65900
| PredictedAffinity Capture-MS | FSW = 0.2223
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT5G36290
| PredictedAffinity Capture-MS | FSW = 0.0421
| Unknown | UNKNOWN PROTEIN |
| AT3G09670
| PredictedAffinity Capture-MS | FSW = 0.1111
| Unknown | PWWP DOMAIN-CONTAINING PROTEIN |
| AT1G33390
| PredictedAffinity Capture-MS | FSW = 0.1048
| Unknown | HELICASE DOMAIN-CONTAINING PROTEIN |
| AT1G08410
| PredictedAffinity Capture-MS | FSW = 0.1018
| Unknown | GTP-BINDING FAMILY PROTEIN |
| AT5G02530
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1379
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT1G05890
| Predictedtwo hybrid | FSW = 0.0356
| Unknown | ZINC FINGER PROTEIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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