Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G08410 - ( GTP-binding family protein )
27 Proteins interacs with AT1G08410Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G25520 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1000
| Unknown | ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G27400 | PredictedAffinity Capture-MS | FSW = 0.0690
| Unknown | 60S RIBOSOMAL PROTEIN L17 (RPL17A) |
AT2G31610 | PredictedAffinity Capture-MS | FSW = 0.0513
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3A) |
AT2G47610 | PredictedAffinity Capture-MS | FSW = 0.0711
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
AT1G43170 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0889
| Unknown | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G14320 | PredictedAffinity Capture-MS | FSW = 0.0351
| Unknown | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G07110 | PredictedAffinity Capture-MS | FSW = 0.1082
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AA) |
AT1G58380 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | XW6 STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G18100 | PredictedAffinity Capture-MS | FSW = 0.0334
| Unknown | 60S RIBOSOMAL PROTEIN L32 (RPL32A) |
AT3G11964 | PredictedAffinity Capture-MS | FSW = 0.0608
| Unknown | RNA BINDING |
AT2G37190 | PredictedAffinity Capture-MS | FSW = 0.0836
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12A) |
AT5G60790 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.1316
| Unknown | ATGCN1 TRANSPORTER |
AT1G10300 | PredictedAffinity Capture-Western | FSW = 0.1536
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT3G55620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1744
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT2G24500 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0673
| Unknown | FZF TRANSCRIPTION FACTOR |
AT2G37990 | PredictedAffinity Capture-MS | FSW = 0.1018
| Unknown | RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN |
AT3G18600 | PredictedAffinity Capture-MS | FSW = 0.0523
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G43460 | PredictedAffinity Capture-MS | FSW = 0.0513
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38A) |
AT1G13160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2361
| Unknown | SDA1 FAMILY PROTEIN |
AT2G03820 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingSynthetic LethalitySynthetic Rescue | FSW = 0.2618
| Unknown | NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN |
AT2G40010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0489
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
AT5G52820 | PredictedAffinity Capture-MS | FSW = 0.0985
| Unknown | WD-40 REPEAT FAMILY PROTEIN / NOTCHLESS PROTEIN PUTATIVE |
AT4G18593 | PredictedAffinity Capture-MS | FSW = 0.0581
| Unknown | DUAL SPECIFICITY PROTEIN PHOSPHATASE-RELATED |
AT3G09350 | PredictedAffinity Capture-MS | FSW = 0.0334
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN |
AT5G02530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0359
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G36730 | PredictedAffinity Capture-MS | FSW = 0.0797
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
AT2G27200 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2821
| Unknown | GTP-BINDING FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454