Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G27400 - ( 60S ribosomal protein L17 (RPL17A) )
24 Proteins interacs with AT1G27400Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G67430 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2528
| Class C:vacuoleplasma membrane | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
AT1G06380 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1003
| Class C:plastid | RIBOSOMAL PROTEIN-RELATED |
AT5G60790 | PredictedAffinity Capture-MS | FSW = 0.0444
| Class C:plasma membrane | ATGCN1 TRANSPORTER |
AT1G80350 | Predictedtwo hybrid | FSW = 0.0296
| Unknown | ERH3 (ECTOPIC ROOT HAIR 3) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT2G18510 | Predictedtwo hybridtwo hybrid | FSW = 0.0114
| Unknown | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G25630 | PredictedSynthetic LethalityCo-expression | FSW = 0.0605
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT3G09680 | Predictedtwo hybrid | FSW = 0.0356
| Unknown | 40S RIBOSOMAL PROTEIN S23 (RPS23A) |
AT4G38130 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0138
| Unknown | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
AT1G70190 | Predictedtwo hybrid | FSW = 0.0459
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT4G17620 | PredictedAffinity Capture-MS | FSW = 0.0201
| Unknown | GLYCINE-RICH PROTEIN |
AT1G10490 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0718
| Unknown | UNKNOWN PROTEIN |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0044
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT1G36280 | PredictedPhenotypic Enhancement | FSW = 0.0395
| Unknown | ADENYLOSUCCINATE LYASE PUTATIVE / ADENYLOSUCCINASE PUTATIVE |
AT1G52980 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0829
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT1G08410 | PredictedAffinity Capture-MS | FSW = 0.0690
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT1G31660 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0631
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
AT4G11820 | PredictedAffinity Capture-MS | FSW = 0.0443
| Unknown | MVA1 ACETYL-COA C-ACETYLTRANSFERASE/ HYDROXYMETHYLGLUTARYL-COA SYNTHASE |
AT2G34357 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1034
| Unknown | BINDING |
AT2G03820 | PredictedAffinity Capture-MS | FSW = 0.0470
| Unknown | NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN |
AT1G15440 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0280
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G61770 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0712
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
AT5G14520 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0712
| Unknown | PESCADILLO-RELATED |
AT4G15770 | PredictedSynthetic LethalityCo-expression | FSW = 0.0553
| Unknown | RNA BINDING / PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454