Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G60790 - ( ATGCN1 transporter )
69 Proteins interacs with AT5G60790| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G27400
   | PredictedAffinity Capture-MS | FSW = 0.0444
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L17 (RPL17A) |
| AT3G42050
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0376
| Class C:plasma membrane | VACUOLAR ATP SYNTHASE SUBUNIT H FAMILY PROTEIN |
| AT1G76030
| PredictedAffinity Capture-MS | FSW = 0.0201
| Class C:plasma membrane | VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT |
| AT2G17360
| PredictedAffinity Capture-MS | FSW = 0.0585
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
| AT2G31610
| PredictedAffinity Capture-MS | FSW = 0.0606
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3 (RPS3A) |
| AT1G67430
| PredictedAffinity Capture-MS | FSW = 0.0703
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
| AT1G43170
| PredictedAffinity Capture-MS | FSW = 0.0513
| Class C:plasma membrane | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G20450
| PredictedAffinity Capture-MS | FSW = 0.0019
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
| AT1G12360
| PredictedAffinity Capture-MS | FSW = 0.0170
| Class C:plasma membrane | KEU (KEULE) PROTEIN TRANSPORTER |
| AT3G44110
| PredictedAffinity Capture-MS | FSW = 0.0130
| Class C:plasma membrane | ATJ3 PROTEIN BINDING |
| AT3G52140 | PredictedAffinity Capture-MS | FSW = 0.0112
| Class C:plasma membrane | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
| AT3G58510
| PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0339
| Class C:plasma membrane | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
| AT5G22060
| PredictedAffinity Capture-MS | FSW = 0.0133
| Class C:plasma membrane | ATJ2 PROTEIN BINDING |
| AT1G54340
| PredictedAffinity Capture-MS | FSW = 0.0352
| Class C:plasma membrane | ICDH (ISOCITRATE DEHYDROGENASE) ISOCITRATE DEHYDROGENASE (NADP+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
| AT2G37190
| PredictedAffinity Capture-MS | FSW = 0.1116
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L12 (RPL12A) |
| AT3G53890
| PredictedAffinity Capture-MS | FSW = 0.0149
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S21 (RPS21B) |
| AT1G50480
| PredictedAffinity Capture-MS | FSW = 0.0101
| Class C:plasma membrane | THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE) ATP BINDING / COPPER ION BINDING / FORMATE-TETRAHYDROFOLATE LIGASE |
| AT2G38290
| Predictedtwo hybrid | FSW = 0.0131
| Class C:plasma membrane | ATAMT2 (AMMONIUM TRANSPORTER 2) AMMONIUM TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY SECONDARY ACTIVE AMMONIUM TRANSMEMBRANE TRANSPORTER |
| AT1G73180
| PredictedAffinity Capture-MS | FSW = 0.0197
| Class C:plasma membrane | EUKARYOTIC TRANSLATION INITIATION FACTOR-RELATED |
| AT1G41880
| PredictedAffinity Capture-MS | FSW = 0.0247
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L35A (RPL35AB) |
| AT1G70600
| PredictedAffinity Capture-MS | FSW = 0.0703
| Class C:plasma membrane | STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G76810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0806
| Class C:plasma membrane | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
| AT3G53430
| PredictedAffinity Capture-MS | FSW = 0.0864
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L12 (RPL12B) |
| AT3G53870
| PredictedAffinity Capture-MS | FSW = 0.0635
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
| AT4G11420
| PredictedAffinity Capture-MS | FSW = 0.0246
| Class C:plasma membrane | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
| AT3G02080
| PredictedAffinity Capture-MS | FSW = 0.0329
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S19 (RPS19A) |
| AT1G03920
| Predictedtwo hybrid | FSW = 0.0224
| Class C:plasma membrane | PROTEIN KINASE PUTATIVE |
| AT2G47610
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0990
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT1G20260
| PredictedAffinity Capture-MS | FSW = 0.0076
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT2G33040
| PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | ATP SYNTHASE GAMMA CHAIN MITOCHONDRIAL (ATPC) |
| AT3G07110
| PredictedAffinity Capture-MS | FSW = 0.0653
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AA) |
| AT5G14590
| PredictedAffinity Capture-MS | FSW = 0.0274
| Unknown | ISOCITRATE DEHYDROGENASE PUTATIVE / NADP+ ISOCITRATE DEHYDROGENASE PUTATIVE |
| AT3G48560
| PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) ACETOLACTATE SYNTHASE/ PYRUVATE DECARBOXYLASE |
| AT2G42520
| PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0296
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
| AT2G17520
| Predictedbiochemical | FSW = 0.0024
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
| AT3G55620
| PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0435
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
| AT1G23290
| PredictedAffinity Capture-MS | FSW = 0.0260
| Unknown | RPL27AB STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G57150
| PredictedAffinity Capture-MS | FSW = 0.0710
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
| AT5G15520
| PredictedAffinity Capture-MS | FSW = 0.0444
| Unknown | 40S RIBOSOMAL PROTEIN S19 (RPS19B) |
| AT3G05060
| PredictedAffinity Capture-MS | FSW = 0.0459
| Unknown | SAR DNA-BINDING PROTEIN PUTATIVE |
| AT3G12860
| PredictedAffinity Capture-MS | FSW = 0.0483
| Unknown | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
| AT3G13920
| PredictedAffinity Capture-MS | FSW = 0.0102
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
| AT1G56110
| PredictedAffinity Capture-MS | FSW = 0.0279
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
| AT1G70190
| PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
| AT1G61580
| PredictedAffinity Capture-MS | FSW = 0.0969
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G39390
| PredictedAffinity Capture-MS | FSW = 0.0317
| Unknown | 60S RIBOSOMAL PROTEIN L35 (RPL35B) |
| AT1G01930
| PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | ZINC FINGER PROTEIN-RELATED |
| AT2G20280
| PredictedAffinity Capture-MS | FSW = 0.0077
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
| AT2G27200
| PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0976
| Unknown | GTP-BINDING FAMILY PROTEIN |
| AT3G10530
| PredictedAffinity Capture-MS | FSW = 0.0586
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G11450
| PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1087
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED |
| AT3G24830
| PredictedAffinity Capture-MS | FSW = 0.0897
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
| AT4G28450
| PredictedAffinity Capture-MS | FSW = 0.0296
| Unknown | NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT4G35490
| PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G36420
| PredictedAffinity Capture-MS | FSW = 0.0379
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
| AT1G16280
| PredictedAffinity Capture-MS | FSW = 0.0578
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT2G32850
| Predictedbiochemical | FSW = 0.0038
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT4G33080
| Predictedtwo hybrid | FSW = 0.0141
| Unknown | PROTEIN KINASE PUTATIVE |
| AT1G29965
| PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
| AT1G21160
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0821
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
| AT1G07070
| PredictedAffinity Capture-MS | FSW = 0.0247
| Unknown | 60S RIBOSOMAL PROTEIN L35A (RPL35AA) |
| AT1G08410
| PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.1316
| Unknown | GTP-BINDING FAMILY PROTEIN |
| AT1G02010
| PredictedAffinity Capture-MS | FSW = 0.0254
| Unknown | SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER |
| AT5G09930
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0144
| Unknown | ATGCN2 TRANSPORTER |
| AT5G64840
| PredictedPhylogenetic profile method | FSW = 0.0370
| Unknown | ATGCN5 (A THALIANA GENERAL CONTROL NON-REPRESSIBLE 5) TRANSPORTER |
| AT3G54540
| PredictedPhylogenetic profile method | FSW = 0.0282
| Unknown | ATGCN4 TRANSPORTER |
| AT1G64550
| PredictedPhylogenetic profile method | FSW = 0.0101
| Unknown | ATGCN3 TRANSPORTER |
| AT3G23010
| PredictedGene fusion method | FSW = 0.0292
| Unknown | ATRLP36 (RECEPTOR LIKE PROTEIN 36) PROTEIN BINDING |
| AT2G46700
| PredictedGene fusion method | FSW = 0.0285
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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