Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G20450 - ( 60S ribosomal protein L14 (RPL14A) )
116 Proteins interacs with AT2G20450Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G27090 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0443
| Class C:vacuoleplasma membraneendoplasmic reticulum | 60S RIBOSOMAL PROTEIN L14 (RPL14B) |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.1660
| Class C:vacuoleplasma membrane | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT3G56190 | PredictedAffinity Capture-MS | FSW = 0.3535
| Class C:vacuoleplasma membrane | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.5053
| Class C:vacuoleplasma membrane | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G08710 | PredictedAffinity Capture-MS | FSW = 0.1590
| Class C:vacuoleplasma membrane | ATH9 (THIOREDOXIN H-TYPE 9) |
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.5841
| Class C:vacuole | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.5340
| Class C:vacuole | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.5766
| Class C:plasma membrane | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.4194
| Class C:plasma membrane | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G23740 | PredictedAffinity Capture-MS | FSW = 0.4502
| Class C:plasma membrane | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.5638
| Class C:plasma membrane | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT5G23900 | PredictedAffinity Capture-MS | FSW = 0.1130
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT5G60790 | PredictedAffinity Capture-MS | FSW = 0.0019
| Class C:plasma membrane | ATGCN1 TRANSPORTER |
AT1G50310 | PredictedAffinity Capture-MS | FSW = 0.3546
| Class C:plasma membrane | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.5187
| Class C:plasma membrane | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G22120 | PredictedAffinity Capture-MS | FSW = 0.1910
| Class C:plasma membrane | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.1875
| Class C:plasma membrane | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT4G36860 | PredictedAffinity Capture-MS | FSW = 0.5641
| Class C:plasma membrane | ZINC ION BINDING |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.4499
| Class C:plasma membrane | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT3G20390 | PredictedAffinity Capture-MS | FSW = 0.1374
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT2G29990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1767
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT5G20020 | PredictedAffinity Capture-MS | FSW = 0.0580
| Unknown | RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.5292
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.5419
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.4240
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.4862
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT5G65430 | PredictedAffinity Capture-MS | FSW = 0.1236
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G26970 | PredictedAffinity Capture-MS | FSW = 0.2538
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.1283
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT5G13050 | PredictedAffinity Capture-MS | FSW = 0.4587
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.3418
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT1G70580 | PredictedAffinity Capture-MS | FSW = 0.0777
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT5G04600 | PredictedAffinity Capture-MS | FSW = 0.0062
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.4374
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.1209
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT4G26600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0910
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT5G59870 | PredictedAffinity Capture-MS | FSW = 0.5414
| Unknown | HTA6 DNA BINDING |
AT3G58660 | PredictedAffinity Capture-MS | FSW = 0.0055
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT3G13445 | PredictedAffinity Capture-MS | FSW = 0.1558
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.4319
| Unknown | HISTONE H2B PUTATIVE |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1249
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.1677
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.4310
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.5023
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.3766
| Unknown | BINDING |
AT4G31470 | PredictedAffinity Capture-MS | FSW = 0.0565
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G57625 | PredictedAffinity Capture-MS | FSW = 0.1704
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3738
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT3G08730 | PredictedAffinity Capture-MS | FSW = 0.1466
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.5388
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.4666
| Unknown | PSF2 |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0337
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT5G47880 | PredictedAffinity Capture-MS | FSW = 0.4642
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
AT2G24040 | PredictedAffinity Capture-MS | FSW = 0.5452
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT1G66740 | Predictedtwo hybrid | FSW = 0.0046
| Unknown | SGA2 |
AT5G60940 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0203
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G33110 | PredictedAffinity Capture-MS | FSW = 0.4810
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.5345
| Unknown | UNKNOWN PROTEIN |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.5369
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.5662
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.4758
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G03667 | PredictedAffinity Capture-MS | FSW = 0.4333
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT1G03530 | PredictedAffinity Capture-MS | FSW = 0.0061
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
AT1G09270 | PredictedAffinity Capture-MS | FSW = 0.0218
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT1G11530 | PredictedAffinity Capture-MS | FSW = 0.4666
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G14310 | PredictedAffinity Capture-MS | FSW = 0.0539
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT1G17070 | PredictedAffinity Capture-MS | FSW = 0.0071
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.4610
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.3054
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G54940 | Predictedtwo hybrid | FSW = 0.0103
| Unknown | PGSIP4 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 4) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.3637
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G76720 | PredictedAffinity Capture-MS | FSW = 0.5083
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT1G78970 | PredictedAffinity Capture-MS | FSW = 0.1435
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT2G03410 | PredictedAffinity Capture-MS | FSW = 0.1880
| Unknown | MO25 FAMILY PROTEIN |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.2160
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G39840 | PredictedAffinity Capture-MS | FSW = 0.0115
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.3405
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G47570 | PredictedAffinity Capture-MS | FSW = 0.1531
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G04710 | PredictedPhenotypic Suppression | FSW = 0.0106
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0490
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.5395
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.4698
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G53510 | PredictedAffinity Capture-MS | FSW = 0.2740
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2732
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G04885 | PredictedAffinity Capture-MS | FSW = 0.0086
| Unknown | PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING |
AT4G19645 | PredictedAffinity Capture-MS | FSW = 0.1051
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G20870 | PredictedAffinity Capture-MS | FSW = 0.0054
| Unknown | FAH2 (FATTY ACID HYDROXYLASE 2) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT4G38630 | PredictedAffinity Capture-MS | FSW = 0.0075
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G02560 | PredictedAffinity Capture-MS | FSW = 0.0827
| Unknown | HTA12 DNA BINDING |
AT5G09390 | PredictedAffinity Capture-MS | FSW = 0.3637
| Unknown | CD2-BINDING PROTEIN-RELATED |
AT5G19150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2338
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G19660 | PredictedAffinity Capture-MS | FSW = 0.4915
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G28470 | PredictedAffinity Capture-MS | FSW = 0.0779
| Unknown | TRANSPORTER |
AT5G42190 | PredictedAffinity Capture-MS | FSW = 0.0016
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G48710 | PredictedAffinity Capture-MS | FSW = 0.0479
| Unknown | UBIQUITIN-RELATED |
AT5G54200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2681
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.3416
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.1410
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.2958
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.6022
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.3857
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.4470
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.5217
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G48780 | PredictedAffinity Capture-MS | FSW = 0.0559
| Unknown | SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE |
AT3G54150 | PredictedAffinity Capture-MS | FSW = 0.1662
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.5053
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.5578
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.4569
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G09630 | PredictedAffinity Capture-MS | FSW = 0.5015
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.4751
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.4416
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.3920
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT2G29400 | PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0070
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G54230 | Predictedtwo hybrid | FSW = 0.0086
| Unknown | NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT5G38110 | Predictedtwo hybridCo-expression | FSW = 0.0149
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454