Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G20450 - ( 60S ribosomal protein L14 (RPL14A) )

116 Proteins interacs with AT2G20450
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G27090

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.0443

Class C:

vacuole

plasma membrane

endoplasmic reticulum

60S RIBOSOMAL PROTEIN L14 (RPL14B)
AT2G01250

Predicted

Affinity Capture-MS

FSW = 0.1660

Class C:

vacuole

plasma membrane

60S RIBOSOMAL PROTEIN L7 (RPL7B)
AT3G56190

Predicted

Affinity Capture-MS

FSW = 0.3535

Class C:

vacuole

plasma membrane

ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT1G22780

Predicted

Affinity Capture-MS

FSW = 0.5053

Class C:

vacuole

plasma membrane

PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G08710

Predicted

Affinity Capture-MS

FSW = 0.1590

Class C:

vacuole

plasma membrane

ATH9 (THIOREDOXIN H-TYPE 9)
AT4G32470

Predicted

Affinity Capture-MS

FSW = 0.5841

Class C:

vacuole

UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE
AT1G07930Predicted

Affinity Capture-MS

FSW = 0.5340

Class C:

vacuole

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G15210

Predicted

Affinity Capture-MS

FSW = 0.5766

Class C:

plasma membrane

PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT5G60390

Predicted

Affinity Capture-MS

FSW = 0.4194

Class C:

plasma membrane

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT5G23740

Predicted

Affinity Capture-MS

FSW = 0.4502

Class C:

plasma membrane

RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G27970

Predicted

Affinity Capture-MS

FSW = 0.5638

Class C:

plasma membrane

NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT5G23900

Predicted

Affinity Capture-MS

FSW = 0.1130

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L13 (RPL13D)
AT5G60790

Predicted

Affinity Capture-MS

FSW = 0.0019

Class C:

plasma membrane

ATGCN1 TRANSPORTER
AT1G50310

Predicted

Affinity Capture-MS

FSW = 0.3546

Class C:

plasma membrane

STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G43370

Predicted

Affinity Capture-MS

FSW = 0.5187

Class C:

plasma membrane

APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT4G22120

Predicted

Affinity Capture-MS

FSW = 0.1910

Class C:

plasma membrane

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT1G13320

Predicted

Affinity Capture-MS

FSW = 0.1875

Class C:

plasma membrane

PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT4G36860

Predicted

Affinity Capture-MS

FSW = 0.5641

Class C:

plasma membrane

ZINC ION BINDING
AT1G09640

Predicted

Affinity Capture-MS

FSW = 0.4499

Class C:

plasma membrane

ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT3G20390

Predicted

Affinity Capture-MS

FSW = 0.1374

Unknown

ENDORIBONUCLEASE L-PSP FAMILY PROTEIN
AT2G29990

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1767

Unknown

NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE
AT5G20020

Predicted

Affinity Capture-MS

FSW = 0.0580

Unknown

RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING
AT2G19860

Predicted

Affinity Capture-MS

FSW = 0.5292

Unknown

HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G08950

Predicted

Affinity Capture-MS

FSW = 0.5419

Unknown

ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN
AT3G19980

Predicted

Affinity Capture-MS

FSW = 0.4240

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G16950

Predicted

Affinity Capture-MS

FSW = 0.4862

Unknown

LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE
AT5G65430

Predicted

Affinity Capture-MS

FSW = 0.1236

Unknown

GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G26970

Predicted

Affinity Capture-MS

FSW = 0.2538

Unknown

ACONITATE HYDRATASE/ COPPER ION BINDING
AT1G51040

Predicted

Affinity Capture-MS

FSW = 0.1283

Unknown

PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE
AT5G13050

Predicted

Affinity Capture-MS

FSW = 0.4587

Unknown

5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE
AT3G11630

Predicted

Affinity Capture-MS

FSW = 0.3418

Unknown

2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT1G70580

Predicted

Affinity Capture-MS

FSW = 0.0777

Unknown

AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE
AT5G04600

Predicted

Affinity Capture-MS

FSW = 0.0062

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G44500

Predicted

Affinity Capture-MS

FSW = 0.4374

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT2G47640

Predicted

Affinity Capture-MS

FSW = 0.1209

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT4G26600

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0910

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT5G59870

Predicted

Affinity Capture-MS

FSW = 0.5414

Unknown

HTA6 DNA BINDING
AT3G58660

Predicted

Affinity Capture-MS

FSW = 0.0055

Unknown

60S RIBOSOMAL PROTEIN-RELATED
AT3G13445

Predicted

Affinity Capture-MS

FSW = 0.1558

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT2G37470

Predicted

Affinity Capture-MS

FSW = 0.4319

Unknown

HISTONE H2B PUTATIVE
AT2G18450

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1249

Unknown

SDH1-2 SUCCINATE DEHYDROGENASE
AT3G10920

Predicted

Affinity Capture-MS

FSW = 0.1677

Unknown

MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE
AT1G72480

Predicted

Affinity Capture-MS

FSW = 0.4310

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK)
AT2G13650

Predicted

Affinity Capture-MS

FSW = 0.5023

Unknown

GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT4G30990

Predicted

Affinity Capture-MS

FSW = 0.3766

Unknown

BINDING
AT4G31470

Predicted

Affinity Capture-MS

FSW = 0.0565

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT5G57625

Predicted

Affinity Capture-MS

FSW = 0.1704

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT3G16050

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3738

Unknown

A37 PROTEIN HETERODIMERIZATION
AT3G08730

Predicted

Affinity Capture-MS

FSW = 0.1466

Unknown

PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G52580

Predicted

Affinity Capture-MS

FSW = 0.5388

Unknown

40S RIBOSOMAL PROTEIN S14 (RPS14C)
AT3G12530

Predicted

Affinity Capture-MS

FSW = 0.4666

Unknown

PSF2
AT4G17190

Predicted

Affinity Capture-MS

FSW = 0.0337

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT5G47880

Predicted

Affinity Capture-MS

FSW = 0.4642

Unknown

ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR
AT2G24040

Predicted

Affinity Capture-MS

FSW = 0.5452

Unknown

HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT1G66740

Predicted

two hybrid

FSW = 0.0046

Unknown

SGA2
AT5G60940

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0203

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G33110

Predicted

Affinity Capture-MS

FSW = 0.4810

Unknown

MATE EFFLUX FAMILY PROTEIN
AT1G51770

Predicted

Affinity Capture-MS

FSW = 0.5345

Unknown

UNKNOWN PROTEIN
AT1G62880

Predicted

Affinity Capture-MS

FSW = 0.5369

Unknown

CORNICHON FAMILY PROTEIN
AT1G64480

Predicted

Affinity Capture-MS

FSW = 0.5662

Unknown

CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING
AT1G71280

Predicted

Affinity Capture-MS

FSW = 0.4758

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT2G03667

Predicted

Affinity Capture-MS

FSW = 0.4333

Unknown

ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING)
AT1G03530

Predicted

Affinity Capture-MS

FSW = 0.0061

Unknown

NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT1G09270

Predicted

Affinity Capture-MS

FSW = 0.0218

Unknown

IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER
AT1G11530

Predicted

Affinity Capture-MS

FSW = 0.4666

Unknown

ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE
AT1G14310

Predicted

Affinity Capture-MS

FSW = 0.0539

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT1G17070

Predicted

Affinity Capture-MS

FSW = 0.0071

Unknown

D111/G-PATCH DOMAIN-CONTAINING PROTEIN
AT1G20696

Predicted

Affinity Capture-MS

FSW = 0.4610

Unknown

HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G20920

Predicted

Affinity Capture-MS

FSW = 0.3054

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT1G54940

Predicted

two hybrid

FSW = 0.0103

Unknown

PGSIP4 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 4) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT1G55730

Predicted

Affinity Capture-MS

FSW = 0.3637

Unknown

ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER
AT1G76720

Predicted

Affinity Capture-MS

FSW = 0.5083

Unknown

GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT1G78970

Predicted

Affinity Capture-MS

FSW = 0.1435

Unknown

LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE
AT2G03410

Predicted

Affinity Capture-MS

FSW = 0.1880

Unknown

MO25 FAMILY PROTEIN
AT2G16740

Predicted

Affinity Capture-MS

FSW = 0.2160

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT2G39840

Predicted

Affinity Capture-MS

FSW = 0.0115

Unknown

TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G41530

Predicted

Affinity Capture-MS

FSW = 0.3405

Unknown

SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS
AT2G47570

Predicted

Affinity Capture-MS

FSW = 0.1531

Unknown

60S RIBOSOMAL PROTEIN L18 (RPL18A)
AT3G04710

Predicted

Phenotypic Suppression

FSW = 0.0106

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT3G12200

Predicted

Affinity Capture-MS

FSW = 0.0490

Unknown

ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G12690

Predicted

Affinity Capture-MS

FSW = 0.5395

Unknown

AGC15 (AGC KINASE 15) KINASE
AT3G52390

Predicted

Affinity Capture-MS

FSW = 0.4698

Unknown

TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT3G53510

Predicted

Affinity Capture-MS

FSW = 0.2740

Unknown

ABC TRANSPORTER FAMILY PROTEIN
AT3G59410

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2732

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G04885

Predicted

Affinity Capture-MS

FSW = 0.0086

Unknown

PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING
AT4G19645

Predicted

Affinity Capture-MS

FSW = 0.1051

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK)
AT4G20870

Predicted

Affinity Capture-MS

FSW = 0.0054

Unknown

FAH2 (FATTY ACID HYDROXYLASE 2) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE
AT4G38630

Predicted

Affinity Capture-MS

FSW = 0.0075

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G02560

Predicted

Affinity Capture-MS

FSW = 0.0827

Unknown

HTA12 DNA BINDING
AT5G09390

Predicted

Affinity Capture-MS

FSW = 0.3637

Unknown

CD2-BINDING PROTEIN-RELATED
AT5G19150

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2338

Unknown

CARBOHYDRATE KINASE FAMILY
AT5G19660

Predicted

Affinity Capture-MS

FSW = 0.4915

Unknown

S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE
AT5G28470

Predicted

Affinity Capture-MS

FSW = 0.0779

Unknown

TRANSPORTER
AT5G42190

Predicted

Affinity Capture-MS

FSW = 0.0016

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G48710

Predicted

Affinity Capture-MS

FSW = 0.0479

Unknown

UBIQUITIN-RELATED
AT5G54200

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2681

Unknown

WD-40 REPEAT FAMILY PROTEIN
AT2G21250

Predicted

Affinity Capture-MS

FSW = 0.3416

Unknown

MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE
AT2G35390

Predicted

Affinity Capture-MS

FSW = 0.1410

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT2G43360

Predicted

Affinity Capture-MS

FSW = 0.2958

Unknown

BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE
AT2G46860

Predicted

Affinity Capture-MS

FSW = 0.6022

Unknown

ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT3G05960

Predicted

Affinity Capture-MS

FSW = 0.3857

Unknown

STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G19940

Predicted

Affinity Capture-MS

FSW = 0.4470

Unknown

SUGAR TRANSPORTER PUTATIVE
AT3G30842

Predicted

Affinity Capture-MS

FSW = 0.5217

Unknown

PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G48780

Predicted

Affinity Capture-MS

FSW = 0.0559

Unknown

SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE
AT3G54150

Predicted

Affinity Capture-MS

FSW = 0.1662

Unknown

EMBRYO-ABUNDANT PROTEIN-RELATED
AT4G17770

Predicted

Affinity Capture-MS

FSW = 0.5053

Unknown

ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT4G25860

Predicted

Affinity Capture-MS

FSW = 0.5578

Unknown

ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING
AT4G39330

Predicted

Affinity Capture-MS

FSW = 0.4569

Unknown

CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT5G09630

Predicted

Affinity Capture-MS

FSW = 0.5015

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT5G19820

Predicted

Affinity Capture-MS

FSW = 0.4751

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G41190

Predicted

Affinity Capture-MS

FSW = 0.4416

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G57890

Predicted

Affinity Capture-MS

FSW = 0.3920

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT2G29400

Predicted

Affinity Capture-MS

FSW = 0.0072

Unknown

TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G02530

Predicted

Affinity Capture-MS

FSW = 0.0070

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G54230

Predicted

two hybrid

FSW = 0.0086

Unknown

NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT5G38110

Predicted

two hybrid

Co-expression

FSW = 0.0149

Unknown

ASF1B (ANTI- SILENCING FUNCTION 1B)

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454