Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G27090 - ( 60S ribosomal protein L14 (RPL14B) )

48 Proteins interacs with AT4G27090
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G46090

Experimental

FSW = 0.0067

Unknown

ZAT7 NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT3G47520

Predicted

Phenotypic Enhancement

FSW = 0.1588

Class C:

vacuole

plastid

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT2G20450

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.0443

Class C:

vacuole

plasma membrane

endoplasmic reticulum

60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT4G36750

Predicted

Synthetic Lethality

FSW = 0.1787

Class C:

vacuole

plasma membrane

QUINONE REDUCTASE FAMILY PROTEIN
AT3G08710

Predicted

Phenotypic Enhancement

FSW = 0.1012

Class C:

vacuole

plasma membrane

ATH9 (THIOREDOXIN H-TYPE 9)
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0306

Class C:

vacuole

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G55920

Predicted

Phenotypic Enhancement

FSW = 0.2608

Class C:

plastid

nucleus

ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT5G65430

Predicted

Phenotypic Suppression

FSW = 0.0411

Class C:

plastid

nucleus

GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G23940

Predicted

Affinity Capture-MS

FSW = 0.0212

Class C:

plastid

DEHYDRATASE FAMILY
AT1G79920

Predicted

Synthetic Lethality

FSW = 0.0095

Class C:

plasma membrane

ATP BINDING
AT5G26340

Predicted

Phenotypic Enhancement

FSW = 0.1506

Class C:

plasma membrane

MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT4G19690

Predicted

Synthetic Rescue

FSW = 0.0503

Class C:

plasma membrane

IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT5G45380

Predicted

Synthetic Lethality

FSW = 0.0138

Class C:

plasma membrane

SODIUMSOLUTE SYMPORTER FAMILY PROTEIN
AT2G43810

Predicted

Phenotypic Enhancement

FSW = 0.0717

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G76300

Predicted

Phenotypic Enhancement

FSW = 0.0692

Class C:

nucleus

SMD3 (SNRNP CORE PROTEIN SMD3)
AT1G77950

Predicted

Synthetic Rescue

FSW = 0.0686

Class C:

nucleus

AGL67 (AGAMOUS-LIKE 67) TRANSCRIPTION FACTOR
AT1G21190

Predicted

Affinity Capture-Western

FSW = 0.1301

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G53165

Predicted

Phenotypic Enhancement

FSW = 0.2705

Class C:

nucleus

ATMAP4K ALPHA1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT2G15430

Predicted

Phenotypic Enhancement

FSW = 0.1949

Class C:

nucleus

NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT4G39160

Predicted

Affinity Capture-MS

interologs mapping

two hybrid

two hybrid

two hybrid

Affinity Capture-MS

Phenotypic Enhancement

Affinity Capture-MS

Co-purification

Co-purification

Affinity Capture-Western

Affinity Capture-Western

two hybrid

Co-purification

FSW = 0.2019

Class C:

nucleus

DNA BINDING / TRANSCRIPTION FACTOR
AT2G18700

Predicted

Phenotypic Enhancement

FSW = 0.0604

Unknown

ATTPS11 TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT2G17270

Predicted

Phenotypic Enhancement

FSW = 0.0745

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT4G33730

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2672

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT5G28060

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.3318

Unknown

40S RIBOSOMAL PROTEIN S24 (RPS24B)
AT4G15900

Predicted

Phenotypic Enhancement

FSW = 0.0901

Unknown

PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G47880

Predicted

Phenotypic Suppression

FSW = 0.0407

Unknown

ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR
AT1G47510

Predicted

two hybrid

FSW = 0.0285

Unknown

5PTASE11 (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 11) HYDROLASE/ PHOSPHATIDYLINOSITOL-345-TRISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-35-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT3G54230

Predicted

two hybrid

FSW = 0.0198

Unknown

NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT5G02760

Predicted

two hybrid

FSW = 0.0211

Unknown

PROTEIN PHOSPHATASE 2C FAMILY PROTEIN / PP2C FAMILY PROTEIN
AT5G21274

Predicted

two hybrid

FSW = 0.0020

Unknown

CAM6 (CALMODULIN 6) CALCIUM ION BINDING
AT5G60940

Predicted

two hybrid

FSW = 0.0277

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G38110

Predicted

two hybrid

FSW = 0.2163

Unknown

ASF1B (ANTI- SILENCING FUNCTION 1B)
AT1G06830

Predicted

Phenotypic Enhancement

FSW = 0.0648

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT1G18830Predicted

Phenotypic Enhancement

FSW = 0.2545

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G61670

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.2724

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK)
AT1G76920

Predicted

Phenotypic Enhancement

FSW = 0.1591

Unknown

F-BOX FAMILY PROTEIN (FBX3)
AT2G01830

Predicted

Phenotypic Enhancement

FSW = 0.1338

Unknown

WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE
AT2G29190

Predicted

Phenotypic Enhancement

FSW = 0.3273

Unknown

APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING
AT2G32765

Predicted

Phenotypic Enhancement

FSW = 0.2536

Unknown

SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) PROTEIN TAG
AT2G40460

Predicted

two hybrid

FSW = 0.0231

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT2G47090

Predicted

Synthetic Lethality

FSW = 0.0463

Unknown

NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT3G05960

Predicted

Phenotypic Enhancement

FSW = 0.1406

Unknown

STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G18850

Predicted

Synthetic Lethality

FSW = 0.0097

Unknown

LPAT5 ACYLTRANSFERASE
AT2G46070

Predicted

Affinity Capture-Western

FSW = 0.0315

Unknown

MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE
AT5G57190

Predicted

Phenotypic Enhancement

FSW = 0.4000

Unknown

PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE
AT4G33950

Predicted

Phenotypic Enhancement

FSW = 0.1705

Unknown

OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE
AT5G19300

Predicted

Phenotypic Suppression

FSW = 0.2536

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK)
AT5G52210

Predicted

Synthetic Rescue

FSW = 0.1407

Unknown

ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454