Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G27090 - ( 60S ribosomal protein L14 (RPL14B) )
48 Proteins interacs with AT4G27090| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G46090
   | Experimental | FSW = 0.0067
| Unknown | ZAT7 NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
| AT3G47520
| PredictedPhenotypic Enhancement | FSW = 0.1588
| Class C:vacuoleplastid | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
| AT2G20450
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0443
| Class C:vacuoleplasma membraneendoplasmic reticulum | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
| AT4G36750
| PredictedSynthetic Lethality | FSW = 0.1787
| Class C:vacuoleplasma membrane | QUINONE REDUCTASE FAMILY PROTEIN |
| AT3G08710
| PredictedPhenotypic Enhancement | FSW = 0.1012
| Class C:vacuoleplasma membrane | ATH9 (THIOREDOXIN H-TYPE 9) |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0306
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT1G55920
| PredictedPhenotypic Enhancement | FSW = 0.2608
| Class C:plastidnucleus | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
| AT5G65430
| PredictedPhenotypic Suppression | FSW = 0.0411
| Class C:plastidnucleus | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT3G23940
| PredictedAffinity Capture-MS | FSW = 0.0212
| Class C:plastid | DEHYDRATASE FAMILY |
| AT1G79920
| PredictedSynthetic Lethality | FSW = 0.0095
| Class C:plasma membrane | ATP BINDING |
| AT5G26340
| PredictedPhenotypic Enhancement | FSW = 0.1506
| Class C:plasma membrane | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
| AT4G19690
| PredictedSynthetic Rescue | FSW = 0.0503
| Class C:plasma membrane | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
| AT5G45380
| PredictedSynthetic Lethality | FSW = 0.0138
| Class C:plasma membrane | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
| AT2G43810
| PredictedPhenotypic Enhancement | FSW = 0.0717
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
| AT1G76300
| PredictedPhenotypic Enhancement | FSW = 0.0692
| Class C:nucleus | SMD3 (SNRNP CORE PROTEIN SMD3) |
| AT1G77950
| PredictedSynthetic Rescue | FSW = 0.0686
| Class C:nucleus | AGL67 (AGAMOUS-LIKE 67) TRANSCRIPTION FACTOR |
| AT1G21190
| PredictedAffinity Capture-Western | FSW = 0.1301
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT1G53165
| PredictedPhenotypic Enhancement | FSW = 0.2705
| Class C:nucleus | ATMAP4K ALPHA1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT2G15430
| PredictedPhenotypic Enhancement | FSW = 0.1949
| Class C:nucleus | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT4G39160
| PredictedAffinity Capture-MSinterologs mappingtwo hybridtwo hybridtwo hybridAffinity Capture-MSPhenotypic EnhancementAffinity Capture-MSCo-purificationCo-purificationAffinity Capture-WesternAffinity Capture-Westerntwo hybridCo-purification | FSW = 0.2019
| Class C:nucleus | DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G18700
| PredictedPhenotypic Enhancement | FSW = 0.0604
| Unknown | ATTPS11 TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
| AT2G17270
| PredictedPhenotypic Enhancement | FSW = 0.0745
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
| AT4G33730
| Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2672
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT5G28060
| PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.3318
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24B) |
| AT4G15900
| PredictedPhenotypic Enhancement | FSW = 0.0901
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G47880
| PredictedPhenotypic Suppression | FSW = 0.0407
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
| AT1G47510
| Predictedtwo hybrid | FSW = 0.0285
| Unknown | 5PTASE11 (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 11) HYDROLASE/ PHOSPHATIDYLINOSITOL-345-TRISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-35-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
| AT3G54230
| Predictedtwo hybrid | FSW = 0.0198
| Unknown | NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
| AT5G02760
| Predictedtwo hybrid | FSW = 0.0211
| Unknown | PROTEIN PHOSPHATASE 2C FAMILY PROTEIN / PP2C FAMILY PROTEIN |
| AT5G21274
| Predictedtwo hybrid | FSW = 0.0020
| Unknown | CAM6 (CALMODULIN 6) CALCIUM ION BINDING |
| AT5G60940
| Predictedtwo hybrid | FSW = 0.0277
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G38110
| Predictedtwo hybrid | FSW = 0.2163
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
| AT1G06830
| PredictedPhenotypic Enhancement | FSW = 0.0648
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
| AT1G18830 | PredictedPhenotypic Enhancement | FSW = 0.2545
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G61670
| PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.2724
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
| AT1G76920
| PredictedPhenotypic Enhancement | FSW = 0.1591
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
| AT2G01830
| PredictedPhenotypic Enhancement | FSW = 0.1338
| Unknown | WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE |
| AT2G29190
| PredictedPhenotypic Enhancement | FSW = 0.3273
| Unknown | APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING |
| AT2G32765
| PredictedPhenotypic Enhancement | FSW = 0.2536
| Unknown | SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) PROTEIN TAG |
| AT2G40460
| Predictedtwo hybrid | FSW = 0.0231
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
| AT2G47090
| PredictedSynthetic Lethality | FSW = 0.0463
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
| AT3G05960
| PredictedPhenotypic Enhancement | FSW = 0.1406
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT3G18850
| PredictedSynthetic Lethality | FSW = 0.0097
| Unknown | LPAT5 ACYLTRANSFERASE |
| AT2G46070
| PredictedAffinity Capture-Western | FSW = 0.0315
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
| AT5G57190
| PredictedPhenotypic Enhancement | FSW = 0.4000
| Unknown | PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE |
| AT4G33950
| PredictedPhenotypic Enhancement | FSW = 0.1705
| Unknown | OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE |
| AT5G19300
| PredictedPhenotypic Suppression | FSW = 0.2536
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK) |
| AT5G52210
| PredictedSynthetic Rescue | FSW = 0.1407
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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