Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G01830 - ( WOL (WOODEN LEG) cytokinin receptor/ osmosensor/ phosphoprotein phosphatase/ protein histidine kinase )
78 Proteins interacs with AT2G01830Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G05070 | Experimentaltwo hybrid | FSW = 0.0282
| Unknown | LHCB22 CHLOROPHYLL BINDING |
AT2G45820 | Experimentaltwo hybrid | FSW = 0.0329
| Unknown | DNA-BINDING PROTEIN PUTATIVE |
AT1G07770 | Experimental | FSW = 0.0142
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G31780 | Experimentaltwo hybrid | FSW = 0.0104
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT1G13440 | Experimentaltwo hybrid | FSW = 0.0163
| Unknown | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT3G11070 | Experimentaltwo hybrid | FSW = 0.0282
| Unknown | OUTER MEMBRANE OMP85 FAMILY PROTEIN |
AT5G20290 | Experimentaltwo hybrid | FSW = 0.0092
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT2G45960 | Experimentaltwo hybrid | FSW = 0.0036
| Unknown | PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL |
AT5G58090 | Experimentaltwo hybrid | FSW = 0.0329
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT1G79530 | Experimentaltwo hybrid | FSW = 0.0133
| Unknown | GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT4G15630 | Experimentalpull downtwo hybrid | FSW = 0.0494
| Unknown | INTEGRAL MEMBRANE FAMILY PROTEIN |
AT5G10940 | Experimentaltwo hybrid | FSW = 0.0494
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G39340 | Experimental | FSW = 0.0425
| Unknown | AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3) HISTIDINE PHOSPHOTRANSFER KINASE |
AT4G36730 | Experimental | FSW = 0.0551
| Unknown | GBF1 SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT2G35530 | Experimental | FSW = 0.0701
| Unknown | BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN |
AT2G46270 | Experimental | FSW = 0.0593
| Unknown | GBF3 (G-BOX BINDING FACTOR 3) SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT1G51650 | Experimentaltwo hybrid | FSW = 0.0282
| Unknown | ATP SYNTHASE EPSILON CHAIN MITOCHONDRIAL |
AT1G62070 | Experimentaltwo hybrid | FSW = 0.0494
| Unknown | UNKNOWN PROTEIN |
AT1G13980 | Experimentaltwo hybrid | FSW = 0.0099
| Unknown | GN (GNOM) GTPGDP ANTIPORTER/ PROTEIN HOMODIMERIZATION |
AT3G29350 | Experimentaltwo hybridtwo hybrid | FSW = 0.0498
| Unknown | AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / SIGNAL TRANSDUCER |
AT1G67710 | Experimentalpull down | FSW = 0.0132
| Unknown | ARR11 (RESPONSE REGULATOR 11) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT2G47950 | Experimentaltwo hybrid | FSW = 0.0494
| Unknown | UNKNOWN PROTEIN |
AT2G38280 | Experimentalpull downtwo hybrid | FSW = 0.0099
| Unknown | FAC1 (EMBRYONIC FACTOR1) AMP DEAMINASE |
AT1G08430 | Experimentaltwo hybrid | FSW = 0.0329
| Unknown | ALMT1 (ALUMINUM-ACTIVATED MALATE TRANSPORTER 1) MALATE TRANSMEMBRANE TRANSPORTER |
AT5G28490 | Experimentaltwo hybrid | FSW = 0.0395
| Unknown | LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1) |
AT3G51630 | Experimentalpull downtwo hybrid | FSW = 0.0395
| Unknown | WNK5 (WITH NO LYSINE (K) KINASE 5) PROTEIN KINASE |
AT1G25260 | Experimentaltwo hybrid | FSW = 0.0163
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT2G23760 | Experimentaltwo hybrid | FSW = 0.0079
| Unknown | BLH4 (BEL1-LIKE HOMEODOMAIN 4) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G60570 | Experimentaltwo hybrid | FSW = 0.0110
| Unknown | KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN |
AT5G59613 | Experimentaltwo hybrid | FSW = 0.0329
| Unknown | UNKNOWN PROTEIN |
AT1G27320 | Experimentalpull downsynthetic growth defect | FSW = 0.0445
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT5G35750 | Experimentalsynthetic growth defect | FSW = 0.0303
| Unknown | AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT3G21510 | Experimental | FSW = 0.0441
| Unknown | AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1) HISTIDINE PHOSPHOTRANSFER KINASE |
AT5G16070 | Experimentaltwo hybrid | FSW = 0.0132
| Unknown | CHAPERONIN PUTATIVE |
AT5G59850 | Experimentaltwo hybrid | FSW = 0.0393
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AF) |
AT4G27090 | PredictedPhenotypic Enhancement | FSW = 0.1338
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14B) |
AT3G47520 | PredictedPhenotypic Enhancement | FSW = 0.1295
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT4G36750 | PredictedPhenotypic Enhancement | FSW = 0.0414
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0213
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G16030 | PredictedPhenotypic Enhancement | FSW = 0.0200
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT1G55920 | PredictedPhenotypic Enhancement | FSW = 0.0954
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT3G55400 | PredictedPhenotypic Enhancement | FSW = 0.0772
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT1G16880 | PredictedAffinity Capture-Westernsynthetic growth defect | FSW = 0.0286
| Unknown | URIDYLYLTRANSFERASE-RELATED |
AT3G23600 | PredictedAffinity Capture-MS | FSW = 0.0146
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT4G36640 | PredictedPhenotypic Enhancement | FSW = 0.0403
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT3G20920 | PredictedPhenotypic Enhancement | FSW = 0.1177
| Unknown | TRANSLOCATION PROTEIN-RELATED |
AT4G18760 | PredictedPhenotypic Enhancement | FSW = 0.0881
| Unknown | ATRLP51 (RECEPTOR LIKE PROTEIN 51) PROTEIN BINDING |
AT5G26340 | PredictedPhenotypic EnhancementAffinity Capture-MS | FSW = 0.0781
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G39480 | PredictedPhenotypic Enhancement | FSW = 0.0526
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G19990 | PredictedAffinity Capture-MS | FSW = 0.0039
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT5G66590 | PredictedAffinity Capture-MS | FSW = 0.0179
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G03120 | PredictedAffinity Capture-MS | FSW = 0.0044
| Unknown | ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE |
AT5G48070 | PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20) HYDROLASE ACTING ON GLYCOSYL BONDS / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
AT3G51895 | PredictedAffinity Capture-MS | FSW = 0.0209
| Unknown | SULTR31 (SULFATE TRANSPORTER 31) SECONDARY ACTIVE SULFATE TRANSMEMBRANE TRANSPORTER/ SULFATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT5G28060 | PredictedPhenotypic Enhancement | FSW = 0.1110
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24B) |
AT4G39100 | PredictedPhenotypic Enhancement | FSW = 0.0977
| Unknown | SHL1 (SHORT LIFE) TRANSCRIPTION FACTOR/ ZINC-MEDIATED TRANSCRIPTIONAL ACTIVATOR |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G18830 | PredictedPhenotypic Enhancement | FSW = 0.1030
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G34340 | PredictedPhenotypic Enhancement | FSW = 0.0398
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT1G76920 | PredictedPhenotypic Suppression | FSW = 0.0869
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT1G61670 | PredictedPhenotypic Enhancement | FSW = 0.2214
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
AT1G66590 | Predictedtwo hybrid | FSW = 0.0039
| Unknown | COX19 FAMILY PROTEIN |
AT2G27340 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1277
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
AT2G29190 | PredictedPhenotypic Enhancement | FSW = 0.1497
| Unknown | APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING |
AT3G05960 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementAffinity Capture-WesternAffinity Capture-Westerninterologs mappingSynthetic LethalityPhenotypic Enhancementsynthetic growth defect | FSW = 0.0891
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G14370 | PredictedPhenotypic Enhancement | FSW = 0.0132
| Unknown | WAG2 KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G16840 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0043
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G25597 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.0116
| Unknown | UNKNOWN PROTEIN |
AT3G29060 | PredictedPhenotypic Enhancement | FSW = 0.1152
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 6 PLANT STRUCTURES EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE 4 ANTHESIS PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G140401) HAS 970 BLAST HITS TO 889 PROTEINS IN 159 SPECIES ARCHAE - 2 BACTERIA - 5 METAZOA - 379 FUNGI - 260 PLANTS - 176 VIRUSES - 28 OTHER EUKARYOTES - 120 (SOURCE NCBI BLINK) |
AT5G42190 | Predictedtwo hybrid | FSW = 0.0091
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G57190 | PredictedPhenotypic Enhancement | FSW = 0.2041
| Unknown | PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.0090
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.0122
| Unknown | XIF MOTOR |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0214
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0115
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G37680 | PredictedAffinity Capture-MS | FSW = 0.0208
| Unknown | HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR |
AT5G23420 | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | HMGB6 TRANSCRIPTION FACTOR |
AT5G61460 | PredictedGene fusion method | FSW = 0.0116
| Unknown | MIM (HYPERSENSITIVE TO MMS IRRADIATION AND MMC) ATP BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454