Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G39340 - ( AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3) histidine phosphotransfer kinase )
22 Proteins interacs with AT5G39340Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G31070 | Experimentaltwo hybrid | FSW = 0.0664
| Class A:nucleusClass B:cytosol | TCP10 (TCP DOMAIN PROTEIN 10) TRANSCRIPTION FACTOR |
AT1G19050 | Experimentalpull downtwo hybridtwo hybrid | FSW = 0.2069
| Class A:nucleusClass B:cytosol | ARR7 (RESPONSE REGULATOR 7) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT4G31920 | Experimental | FSW = 0.1317
| Class A:nucleusClass B:cytosol | ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT3G04280 | Experimentaltwo hybridprotein complementation assaysplit-reporter assay | FSW = 0.1177
| Class A:cytosolClass B:nucleusClass D:plastid (p = 0.78)cytosol (p = 0.67) | ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22) PHOSPHOHISTIDINE PHOSPHATASE/ TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT3G29350 | Experimental | FSW = 0.7315
| Class A:cytosolClass B:nucleusClass D:plastid (p = 0.78) | AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / SIGNAL TRANSDUCER |
AT2G40670 | Experimentalpull down | FSW = 0.1789
| Class A:cytosolClass B:nucleusClass D:cytosol (p = 0.67) | ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT1G66340 | Experimentaltwo hybrid | FSW = 0.0729
| Class B:unclearnucleuscytosolClass D:cytosol (p = 0.67) | ETR1 (ETHYLENE RESPONSE 1) ETHYLENE BINDING / PROTEIN HISTIDINE KINASE/ TWO-COMPONENT RESPONSE REGULATOR |
AT1G23420 | Experimentalpull down | FSW = 0.0315
| Class D:plastid (p = 0.78) | INO (INNER NO OUTER) PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT1G59940 | Experimentaltwo hybridtwo hybrid | FSW = 0.0832
| Class D:plastid (p = 0.78) | ARR3 (RESPONSE REGULATOR 3) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT3G48100 | Experimentalpull downtwo hybridtwo hybrid | FSW = 0.0847
| Unknown | ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT2G41310 | Experimentaltwo hybridtwo hybrid | FSW = 0.1789
| Unknown | ATRR3 (RESPONSE REGULATOR 3) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT3G16857 | Experimentaltwo hybridtwo hybridtwo hybrid | FSW = 0.2613
| Unknown | ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT4G16110 | Experimentaltwo hybrid | FSW = 0.2483
| Unknown | ARR2 (ARABIDOPSIS RESPONSE REGULATOR 2) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT3G50410 | Experimental | FSW = 0.1067
| Unknown | OBP1 (OBF BINDING PROTEIN 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT3G57040 | Experimentaltwo hybrid | FSW = 0.1984
| Unknown | ARR9 (RESPONSE REGULATOR 9) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT2G01760 | Experimentalpull down | FSW = 0.1602
| Unknown | ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT5G35750 | Experimentalpull downtwo hybridtwo hybrid | FSW = 0.0887
| Unknown | AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G27320 | Experimentalpull down | FSW = 0.0667
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT2G01830 | Experimental | FSW = 0.0425
| Unknown | WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE |
AT2G47430 | Experimentaltwo hybrid | FSW = 0.0664
| Unknown | CKI1 (CYTOKININ-INDEPENDENT 1) PROTEIN HISTIDINE KINASE/ TWO-COMPONENT RESPONSE REGULATOR |
AT1G03430 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1735
| Unknown | AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5) HISTIDINE PHOSPHOTRANSFER KINASE |
AT4G04402 | PredictedPhylogenetic profile method | FSW = 0.0645
| Unknown | TWO-COMPONENT PHOSPHORELAY MEDIATOR PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454