Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G01760 - ( ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14) transcription factor/ two-component response regulator )
24 Proteins interacs with AT2G01760Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G01090 | Experimentaltwo hybrid | FSW = 0.1481
| Unknown | PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA) PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT2G02100 | Experimentaltwo hybrid | FSW = 0.1185
| Class D:nucleus (p = 0.78) | LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69) PEPTIDASE INHIBITOR |
AT1G66480 | Experimentaltwo hybrid | FSW = 0.1481
| Class D:nucleus (p = 0.78) | PMI2 (PLASTID MOVEMENT IMPAIRED 2) |
AT1G55350 | Experimentaltwo hybrid | FSW = 0.0593
| Unknown | DEK1 (DEFECTIVE KERNEL 1) CALCIUM-DEPENDENT CYSTEINE-TYPE ENDOPEPTIDASE/ CYSTEINE-TYPE ENDOPEPTIDASE |
AT5G39340 | Experimentalpull down | FSW = 0.1602
| Unknown | AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3) HISTIDINE PHOSPHOTRANSFER KINASE |
AT4G31920 | Experimental | FSW = 0.1754
| Class D:nucleus (p = 0.78) | ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT3G29350 | Experimentalpull downtwo hybridtwo hybrid | FSW = 0.1750
| Class D:nucleus (p = 0.78) | AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / SIGNAL TRANSDUCER |
AT4G16110 | Experimentalpull down | FSW = 0.1754
| Class D:nucleus (p = 0.78) | ARR2 (ARABIDOPSIS RESPONSE REGULATOR 2) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT1G71230 | Experimental | FSW = 0.0180
| Class D:nucleus (p = 0.78) | CSN5B (COP9-SIGNALOSOME 5B) PROTEIN BINDING |
AT3G46230 | Experimentaltwo hybrid | FSW = 0.0658
| Unknown | ATHSP174 |
AT1G20100 | Experimentaltwo hybrid | FSW = 0.1185
| Unknown | UNKNOWN PROTEIN |
AT5G49710 | Experimentaltwo hybrid | FSW = 0.1185
| Unknown | UNKNOWN PROTEIN |
AT5G37740 | Experimentaltwo hybrid | FSW = 0.1185
| Unknown | C2 DOMAIN-CONTAINING PROTEIN |
AT1G09980 | Experimentaltwo hybrid | FSW = 0.1481
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN MITOCHONDRION EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF676 HYDROLASE-LIKE (INTERPROIPR007751) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ZW18 (TAIRAT1G583502) HAS 342 BLAST HITS TO 275 PROTEINS IN 70 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 214 FUNGI - 0 PLANTS - 45 VIRUSES - 0 OTHER EUKARYOTES - 83 (SOURCE NCBI BLINK) |
AT2G31160 | Experimentaltwo hybrid | FSW = 0.1185
| Unknown | LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3) |
AT2G45450 | Experimentaltwo hybrid | FSW = 0.1185
| Unknown | ZPR1 (LITTLE ZIPPER 1) PROTEIN BINDING |
AT1G16680 | Experimentaltwo hybrid | FSW = 0.1185
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / S-LOCUS PROTEIN PUTATIVE |
AT1G34370 | Experimentaltwo hybrid | FSW = 0.0390
| Unknown | STOP1 (SENSITIVE TO PROTON RHIZOTOXICITY 1) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT5G35750 | Experimentalpull down | FSW = 0.0606
| Unknown | AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT3G21510 | Experimentalpull down | FSW = 0.1659
| Unknown | AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1) HISTIDINE PHOSPHOTRANSFER KINASE |
AT2G47110 | Experimentaltwo hybrid | FSW = 0.0402
| Unknown | UBQ6 PROTEIN BINDING |
AT3G52590 | Experimentaltwo hybrid | FSW = 0.0121
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G20620 | PredictedGene fusion method | FSW = 0.0559
| Unknown | UBQ4 PROTEIN BINDING |
AT2G15320 | PredictedGene fusion method | FSW = 0.1607
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454