Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G35750 - ( AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) cytokinin receptor/ osmosensor/ protein histidine kinase )
49 Proteins interacs with AT5G35750Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G42080 | Experimentalpull downtwo hybrid | FSW = 0.0162
| Unknown | ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT1G69840 | Experimentalpull downtwo hybrid | FSW = 0.0617
| Unknown | BAND 7 FAMILY PROTEIN |
AT1G33140 | Experimentaltwo hybrid | FSW = 0.0039
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G62740 | Experimentalpull downtwo hybrid | FSW = 0.0679
| Unknown | BAND 7 FAMILY PROTEIN |
AT1G17100 | Experimentaltwo hybrid | FSW = 0.0615
| Unknown | SOUL HEME-BINDING FAMILY PROTEIN |
AT1G64330 | Experimentaltwo hybrid | FSW = 0.0140
| Unknown | MYOSIN HEAVY CHAIN-RELATED |
AT5G64070 | Experimentalpull downtwo hybrid | FSW = 0.0308
| Unknown | PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1) 1-PHOSPHATIDYLINOSITOL 4-KINASE |
AT3G27830 | Experimental | FSW = 0.0174
| Unknown | RPL12-A (RIBOSOMAL PROTEIN L12-A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G67090 | Experimental | FSW = 0.0440
| Unknown | RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) COPPER ION BINDING / RIBULOSE-BISPHOSPHATE CARBOXYLASE |
AT5G42650 | Experimentaltwo hybrid | FSW = 0.0769
| Unknown | AOS (ALLENE OXIDE SYNTHASE) ALLENE OXIDE SYNTHASE/ HYDRO-LYASE/ OXYGEN BINDING |
AT2G33430 | Experimentaltwo hybrid | FSW = 0.0769
| Unknown | DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) |
AT5G13120 | Experimentalpull downtwo hybrid | FSW = 0.0154
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN |
AT1G22450 | Experimentaltwo hybrid | FSW = 0.0485
| Unknown | COX6B (CYTOCHROME C OXIDASE 6B) CYTOCHROME-C OXIDASE |
AT3G52920 | Experimentaltwo hybrid | FSW = 0.0769
| Unknown | UNKNOWN PROTEIN |
AT2G20580 | Experimental | FSW = 0.0105
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT5G39340 | Experimentalpull downtwo hybridtwo hybrid | FSW = 0.0887
| Unknown | AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3) HISTIDINE PHOSPHOTRANSFER KINASE |
AT5G53950 | Experimentaltwo hybrid | FSW = 0.0615
| Unknown | CUC2 (CUP-SHAPED COTYLEDON 2) TRANSCRIPTION FACTOR |
AT3G11100 | Experimentaltwo hybrid | FSW = 0.0615
| Unknown | TRANSCRIPTION FACTOR |
AT5G11740 | Experimentaltwo hybrid | FSW = 0.0769
| Unknown | AGP15 (ARABINOGALACTAN PROTEIN 15) |
AT3G29350 | Experimentalpull downtwo hybridtwo hybrid | FSW = 0.0982
| Unknown | AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / SIGNAL TRANSDUCER |
AT5G08790 | Experimentaltwo hybrid | FSW = 0.0513
| Unknown | ATAF2 TRANSCRIPTION ACTIVATOR |
AT2G01760 | Experimentalpull down | FSW = 0.0606
| Unknown | ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT5G63790 | Experimentaltwo hybrid | FSW = 0.0769
| Unknown | ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102) TRANSCRIPTION FACTOR |
AT5G11490 | Experimentaltwo hybrid | FSW = 0.0440
| Unknown | ADAPTIN FAMILY PROTEIN |
AT1G26270 | Experimentalinteraction detection methodtwo hybridtwo hybrid | FSW = 0.0280
| Unknown | PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN |
AT3G09130 | Experimentaltwo hybrid | FSW = 0.0769
| Unknown | UNKNOWN PROTEIN |
AT1G65430 | Experimentaltwo hybrid | FSW = 0.0513
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT1G77370 | Experimentaltwo hybrid | FSW = 0.0615
| Unknown | GLUTAREDOXIN PUTATIVE |
AT4G08500 | Experimental | FSW = 0.0046
| Unknown | MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING |
AT5G42060 | Experimentaltwo hybrid | FSW = 0.0615
| Unknown | UNKNOWN PROTEIN |
AT3G10020 | Experimentaltwo hybrid | FSW = 0.0769
| Unknown | UNKNOWN PROTEIN |
AT4G27130 | Experimentaltwo hybrid | FSW = 0.0051
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT3G18990 | Experimentaltwo hybrid | FSW = 0.0769
| Unknown | VRN1 (REDUCED VERNALIZATION RESPONSE 1) TRANSCRIPTION REPRESSOR |
AT1G31810 | Experimentaltwo hybrid | FSW = 0.0280
| Unknown | ACTIN BINDING |
AT1G53900 | Experimentaltwo hybrid | FSW = 0.0070
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT4G29040 | Experimentaltwo hybrid | FSW = 0.0145
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
AT4G27160 | Experimentalpull downtwo hybrid | FSW = 0.0513
| Unknown | AT2S3 LIPID BINDING / NUTRIENT RESERVOIR |
AT5G07010 | Experimentaltwo hybrid | FSW = 0.0769
| Unknown | ST2A (SULFOTRANSFERASE 2A) HYDROXYJASMONATE SULFOTRANSFERASE/ SULFOTRANSFERASE |
AT3G48600 | Experimentaltwo hybrid | FSW = 0.0769
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT2G15300 | Experimentaltwo hybrid | FSW = 0.0769
| Unknown | LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE |
AT5G52410 | Experimentaltwo hybrid | FSW = 0.0769
| Unknown | UNKNOWN PROTEIN |
AT5G48470 | Experimentaltwo hybrid | FSW = 0.0769
| Unknown | UNKNOWN PROTEIN |
AT1G27320 | Experimentalsynthetic growth defectpull downsynthetic growth defectPhenotypic Enhancement | FSW = 0.0351
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT3G21510 | Experimentalpull down | FSW = 0.0918
| Unknown | AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1) HISTIDINE PHOSPHOTRANSFER KINASE |
AT2G01830 | Experimentalsynthetic growth defect | FSW = 0.0303
| Unknown | WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE |
AT4G39820 | Experimentaltwo hybrid | FSW = 0.0769
| Unknown | BINDING |
AT1G66580 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.0038
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
AT1G20620 | PredictedSynthetic Rescue | FSW = 0.0128
| Unknown | CAT3 (CATALASE 3) CATALASE |
AT1G06830 | PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454