Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G29040 - ( RPT2a (regulatory particle AAA-ATPase 2a) ATPase )
43 Proteins interacs with AT4G29040Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G25490 | Experimentalbiochemical | FSW = 0.3167
| Unknown | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G48100 | Experimentaltwo hybrid | FSW = 0.0134
| Unknown | ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT5G35750 | Experimentaltwo hybrid | FSW = 0.0145
| Unknown | AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT3G15180 | Predictedin vitroAffinity Capture-MS | FSW = 0.2562
| Unknown | PROTEASOME-RELATED |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.2724
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G06510 | PredictedAffinity Capture-MS | FSW = 0.0205
| Unknown | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT1G45000 | PredictedPhylogenetic profile method | FSW = 0.4935
| Unknown | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
AT1G75990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4400
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT2G20580 | PredictedAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3339
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G53750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhylogenetic profile method | FSW = 0.4201
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT5G19990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhylogenetic profile method | FSW = 0.2976
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT5G42790 | PredictedAffinity Capture-MS | FSW = 0.3274
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G20140 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6757
| Unknown | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
AT4G24820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5760
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT1G09100 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5177
| Unknown | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
AT3G05530 | PredictedAffinity Capture-MSAffinity Capture-MSPhylogenetic profile method | FSW = 0.6318
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
AT5G58290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationco-fractionationCo-fractionationPhylogenetic profile methodCo-expression | FSW = 0.5287
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT5G03340 | Predictedin vivoin vitro | FSW = 0.0565
| Unknown | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
AT5G38470 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2402
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT4G28470 | Predictedtwo hybridtwo hybridin vitroAffinity Capture-MS | FSW = 0.1852
| Unknown | RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B) BINDING / ENZYME REGULATOR |
AT4G34540 | Predictedtwo hybrid | FSW = 0.0062
| Unknown | ISOFLAVONE REDUCTASE FAMILY PROTEIN |
AT5G54590 | Predictedtwo hybrid | FSW = 0.0454
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G57950 | Predictedtwo hybrid | FSW = 0.1423
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT1G53780 | Predictedin vitroAffinity Capture-MSPhylogenetic profile method | FSW = 0.4512
| Unknown | ATP BINDING / ATPASE/ HYDROLASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G45620 | PredictedAffinity Capture-MS | FSW = 0.1442
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G05780 | Predictedin vitroAffinity Capture-MS | FSW = 0.2738
| Unknown | RPN8A (RP NON-ATPASE SUBUNIT 8A) |
AT1G29150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3192
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G51710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2570
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G64520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4615
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT2G03430 | PredictedAffinity Capture-MS | FSW = 0.4449
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT2G32730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4211
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT3G11270 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4776
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT4G19006 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5312
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT1G10520 | PredictedAffinity Capture-MS | FSW = 0.3143
| Unknown | DNA POLYMERASE LAMBDA (POLL) |
AT3G02820 | PredictedSynthetic Lethality | FSW = 0.0396
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT4G38630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1786
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G09900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4416
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT5G23540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5178
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT5G51140 | PredictedAffinity Capture-MS | FSW = 0.0267
| Unknown | PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT5G43010 | PredictedAffinity Capture-MSAffinity Capture-MSPhylogenetic profile method | FSW = 0.6237
| Unknown | RPT4A ATPASE |
AT5G20000 | PredictedPhylogenetic profile method | FSW = 0.2550
| Unknown | 26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE |
AT5G51980 | PredictedGene fusion method | FSW = 0.1481
| Unknown | WD-40 REPEAT FAMILY PROTEIN / ZFWD2 PROTEIN (ZFWD2) PUTATIVE |
AT4G34110 | PredictedGene fusion method | FSW = 0.0360
| Unknown | PAB2 (POLY(A) BINDING 2) RNA BINDING / TRANSLATION INITIATION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454