Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G10520 - ( DNA polymerase lambda (POLL) )
16 Proteins interacs with AT1G10520Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G20580 | PredictedAffinity Capture-MS | FSW = 0.1641
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G53750 | PredictedAffinity Capture-MS | FSW = 0.1928
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT1G16970 | PredictedSynthetic Rescue | FSW = 0.0435
| Unknown | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT2G29570 | Predictedin vitroin vitroAffinity Capture-MSin vitro | FSW = 0.0401
| Unknown | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
AT5G58290 | PredictedAffinity Capture-MS | FSW = 0.2590
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT1G51710 | PredictedAffinity Capture-MS | FSW = 0.1747
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G66800 | PredictedAffinity Capture-MS | FSW = 0.0526
| Unknown | CINNAMYL-ALCOHOL DEHYDROGENASE FAMILY / CAD FAMILY |
AT1G64520 | PredictedAffinity Capture-MS | FSW = 0.2684
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT4G19006 | PredictedAffinity Capture-MS | FSW = 0.3009
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT4G29040 | PredictedAffinity Capture-MS | FSW = 0.3143
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
AT5G09900 | PredictedAffinity Capture-MS | FSW = 0.2546
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT5G23540 | PredictedAffinity Capture-MS | FSW = 0.2759
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT5G26680 | PredictedPhenotypic Enhancement | FSW = 0.0180
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G43010 | PredictedAffinity Capture-MS | FSW = 0.2930
| Unknown | RPT4A ATPASE |
AT5G57160 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0241
| Unknown | ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING |
AT1G64750 | PredictedAffinity Capture-MS | FSW = 0.2352
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454