Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G28470 - ( RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B) binding / enzyme regulator )
23 Proteins interacs with AT4G28470Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48750 | ExperimentalAffinity Capture-MSaffinity technology | FSW = 0.0059
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT2G25490 | Experimentalbiochemical | FSW = 0.1150
| Unknown | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G14010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1231
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G79410 | Predictedtwo hybrid | FSW = 0.1231
| Unknown | ATOCT5 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER5) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G15180 | PredictedAffinity Capture-MSin vitro | FSW = 0.2653
| Unknown | PROTEASOME-RELATED |
AT1G16880 | PredictedAffinity Capture-MS | FSW = 0.1655
| Unknown | URIDYLYLTRANSFERASE-RELATED |
AT2G20580 | PredictedPhylogenetic profile method | FSW = 0.1152
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT5G02490 | Predictedtwo hybrid | FSW = 0.0137
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT4G24820 | PredictedAffinity Capture-MS | FSW = 0.1356
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT3G08980 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1290
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT5G58290 | PredictedAffinity Capture-MS | FSW = 0.0976
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0324
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT4G29040 | Predictedtwo hybridtwo hybridin vitroAffinity Capture-MS | FSW = 0.1852
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
AT5G20620 | Predictedtwo hybrid | FSW = 0.0280
| Unknown | UBQ4 PROTEIN BINDING |
AT5G57815 | Predictedtwo hybrid | FSW = 0.0368
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 6B PUTATIVE |
AT3G17205 | PredictedReconstituted Complex | FSW = 0.1905
| Unknown | UPL6 (UBIQUITIN PROTEIN LIGASE 6) UBIQUITIN-PROTEIN LIGASE |
AT4G06599 | Predictedtwo hybrid | FSW = 0.1905
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT1G53780 | Predictedin vitroAffinity Capture-MS | FSW = 0.2424
| Unknown | ATP BINDING / ATPASE/ HYDROLASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G07590 | PredictedAffinity Capture-MS | FSW = 0.0430
| Unknown | WD-40 REPEAT PROTEIN FAMILY |
AT5G45620 | PredictedAffinity Capture-MS | FSW = 0.0541
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT1G27040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0536
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT2G31060 | Predictedsynthetic growth defect | FSW = 0.0941
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
AT5G16960 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1538
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454