Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G53900 - ( GTP binding / translation initiation factor )
41 Proteins interacs with AT1G53900Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G35750 | Experimentaltwo hybrid | FSW = 0.0070
| Unknown | AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT3G16480 | PredictedAffinity Capture-MS | FSW = 0.0625
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT3G62870 | Predictedtwo hybrid | FSW = 0.0312
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G37870 | PredictedAffinity Capture-MS | FSW = 0.0308
| Unknown | PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1) ATP BINDING / PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)/ PHOSPHOENOLPYRUVATE CARBOXYKINASE/ PURINE NUCLEOTIDE BINDING |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.1376
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G19160 | Predictedtwo hybridReconstituted ComplexAffinity Capture-Western | FSW = 0.1089
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
AT1G80030 | PredictedAffinity Capture-MS | FSW = 0.0702
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.0910
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT5G35790 | PredictedAffinity Capture-MS | FSW = 0.0504
| Unknown | G6PD1 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 1) GLUCOSE-6-PHOSPHATE DEHYDROGENASE |
AT3G18790 | PredictedAffinity Capture-MS | FSW = 0.0638
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.1147
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT5G12350 | PredictedAffinity Capture-MS | FSW = 0.1008
| Unknown | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
AT5G43900 | PredictedAffinity Capture-MS | FSW = 0.0151
| Unknown | MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR |
AT4G09570 | PredictedAffinity Capture-MS | FSW = 0.0193
| Unknown | CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
AT5G27720 | PredictedAffinity Capture-MS | FSW = 0.0481
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.1120
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.0854
| Unknown | HISTONE H2B PUTATIVE |
AT4G10040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0195
| Unknown | CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT1G15960 | PredictedAffinity Capture-MS | FSW = 0.0258
| Unknown | NRAMP6 INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.1770
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT1G02100 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G12730 | PredictedAffinity Capture-MS | FSW = 0.0515
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.0961
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G35530 | PredictedAffinity Capture-MS | FSW = 0.0535
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.1350
| Unknown | UNKNOWN PROTEIN |
AT4G04700 | PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1016
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MS | FSW = 0.0475
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT2G03690 | PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.1894
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G22040 | PredictedAffinity Capture-MS | FSW = 0.0361
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G28720 | PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | HISTONE H2B PUTATIVE |
AT3G17630 | PredictedAffinity Capture-MS | FSW = 0.0165
| Unknown | ATCHX19 (CATION/H+ EXCHANGER 19) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.1294
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.0562
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT5G01390 | PredictedAffinity Capture-MS | FSW = 0.0394
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT5G09630 | PredictedAffinity Capture-MS | FSW = 0.1135
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G13150 | PredictedAffinity Capture-MS | FSW = 0.0205
| Unknown | ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.0711
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G28470 | PredictedAffinity Capture-MS | FSW = 0.1000
| Unknown | TRANSPORTER |
AT5G37830 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0448
| Unknown | OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454