Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G66340 - ( ETR1 (ETHYLENE RESPONSE 1) ethylene binding / protein histidine kinase/ two-component response regulator )
15 Proteins interacs with AT1G66340Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G26070 | Experimentalconfocal microscopy | FSW = 0.0395
| Class A:unclearClass B:golgiendoplasmic reticulumClass D:plasma membrane (p = 0.25)cytosol (p = 0.67) | RTE1 (REVERSION-TO-ETHYLENE SENSITIVITY1) |
AT1G56340 | Experimentaltwo hybrid | FSW = 0.0684
| Class B:vacuoleunclearplastidmitochondrionendoplasmic reticulum | CRT1 (CALRETICULIN 1) CALCIUM ION BINDING / UNFOLDED PROTEIN BINDING |
AT5G39340 | Experimentaltwo hybrid | FSW = 0.0729
| Class B:unclearnucleuscytosolClass D:cytosol (p = 0.67) | AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3) HISTIDINE PHOSPHOTRANSFER KINASE |
AT3G29350 | Experimentaltwo hybrid | FSW = 0.1000
| Class B:unclearcytosolClass D:mitochondrion (p = 0.82) | AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / SIGNAL TRANSDUCER |
AT5G03730 | ExperimentalReconstituted ComplexAffinity Capture-Westerntwo hybridtwo hybridpull downpull downco-fractionationCo-fractionationCo-purificationReconstituted ComplexAffinity Capture-Westerntwo hybridaffinity technology | FSW = 0.0364
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT3G21510 | Experimentaltwo hybrid | FSW = 0.0758
| Unknown | AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1) HISTIDINE PHOSPHOTRANSFER KINASE |
AT1G04310 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.0381
| Unknown | ERS2 (ETHYLENE RESPONSE SENSOR 2) ETHYLENE BINDING / GLYCOGEN SYNTHASE KINASE 3/ PROTEIN HISTIDINE KINASE/ RECEPTOR |
AT3G23150 | ExperimentalAffinity Capture-Westerntwo hybridaffinity technology | FSW = 0.1390
| Unknown | ETR2 (ETHYLENE RESPONSE 2) ETHYLENE BINDING / GLYCOGEN SYNTHASE KINASE 3/ PROTEIN HISTIDINE KINASE/ RECEPTOR |
AT3G54850 | Experimentalinteraction detection method | FSW = 0.0635
| Unknown | PUB14 UBIQUITIN-PROTEIN LIGASE |
AT2G40940 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.0896
| Unknown | ERS1 (ETHYLENE RESPONSE SENSOR 1) ETHYLENE BINDING / PROTEIN HISTIDINE KINASE/ RECEPTOR |
AT3G04580 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.0863
| Unknown | EIN4 (ETHYLENE INSENSITIVE 4) ETHYLENE BINDING / GLYCOGEN SYNTHASE KINASE 3/ PROTEIN HISTIDINE KINASE/ RECEPTOR |
AT5G03280 | Experimentalfluorescence acceptor donor pairReconstituted Complex | FSW = 0.0410
| Unknown | EIN2 (ETHYLENE INSENSITIVE 2) TRANSPORTER |
AT2G29760 | PredictedGene fusion method | FSW = 0.2909
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT5G65570 | PredictedGene fusion method | FSW = 0.2667
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G16830 | PredictedGene fusion method | FSW = 0.1390
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN MITOCHONDRION CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MEE40 (MATERNAL EFFECT EMBRYO ARREST 40) (TAIRAT3G537001) HAS 16848 BLAST HITS TO 5324 PROTEINS IN 149 SPECIES ARCHAE - 2 BACTERIA - 6 METAZOA - 176 FUNGI - 119 PLANTS - 16112 VIRUSES - 0 OTHER EUKARYOTES - 433 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454